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CONTRIBUTING.md
@@ -12,18 +12,26 @@ This document covers the standards and process for contributing.
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### Local setup
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-Using `pip`, activate a virtual environment first, then:
+Clone the repository using HTTPS or SSH:
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```bash
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+# HTTPS
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+git clone https://github.com/bioscan-ml/BarcodeBERT.git
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+
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+# SSH
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git clone git@github.com:bioscan-ml/BarcodeBERT.git
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+```
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+Using `pip`, activate a virtual environment first, then:
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+```bash
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cd BarcodeBERT
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pip install -e .
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```
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Or, using `uv` (creates and manages the environment automatically):
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-git clone git@github.com:bioscan-ml/BarcodeBERT.git
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uv sync
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