Dependency Dashboard

[renovate]

This issue lists Renovate updates and detected dependencies. Read the Dependency Dashboard docs to learn more.
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Config Migration Needed

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Rate-Limited

The following updates are currently rate-limited. To force their creation now, click on a checkbox below.

• Update actions/checkout action to v6
• Update actions/setup-go action to v6
• Update actions/setup-java action to v5
• Update actions/upload-artifact action to v6
• Update dependency cython to v3
• Update dependency ubuntu to v24
• Update docker/build-push-action action to v6
• Update docker/login-action action to v3
• Update docker/setup-buildx-action action to v3
• 🔐 Create all rate-limited PRs at once 🔐

PR Edited (Blocked)

The following updates have been manually edited so Renovate will no longer make changes. To discard all commits and start over, click on a checkbox below.

• Update dependency amici to <=0.34.2
• Update dependency libroadrunner to <2.8.1

Open

The following updates have all been created. To force a retry/rebase of any, click on a checkbox below.

• Update dependency numpy to v1 [SECURITY]
• Update python Docker tag to v3.11
• Update actions/cache action to v5
• Click on this checkbox to rebase all open PRs at once

Detected Dependencies

dockerfile (2)

Dockerfile

Dockerfile-base (1)

• python 3.9-slim-buster → [Updates: 3.11-slim-buster]

github-actions (2)

.github/workflows/buildDockerImage.yml (8)

• actions/checkout v3 → [Updates: v6]
• docker/setup-buildx-action v1 → [Updates: v3]
• actions/cache v2 → [Updates: v5]
• docker/login-action v1 → [Updates: v3]
• docker/build-push-action v2 → [Updates: v6]
• docker/build-push-action v2 → [Updates: v6]
• actions/create-release v1
• ubuntu 20.04 → [Updates: 24.04]

.github/workflows/validateCommitSimulator.yml (8)

• actions/setup-java v3 → [Updates: v5]
• actions/setup-go v3 → [Updates: v6]
• actions/checkout v3 → [Updates: v6]
• GabrielBB/xvfb-action v1
• mxschmitt/action-tmate v3
• actions/upload-artifact v4 → [Updates: v6]
• ubuntu 22.04 → [Updates: 24.04]
• go ^1.13.1

pipenv (1)

Dockerfile-assets/Pipfile (22)

• biosimulators-utils >=0.1.166
• numpy <1.22.0 → [Updates: <1.22.1]
• amici <=0.11.21 → [Updates: <=0.34.2]
• biosimulators-amici >=0.1.22
• biosimulators-bionetgen >=0.1.20
• biosimulators-boolnet >=0.1.18
• sympy !=1.8,!=1.9
• biosimulators-cbmpy >=0.1.14
• biosimulators-cobrapy >=0.1.23
• biosimulators-copasi >=0.1.34
• biosimulators-gillespy2 >=0.1.37
• biosimulators-ginsim >=0.0.9
• biosimulators-libsbmlsim >=0.0.6
• biosimulators-masspy >=0.0.9
• cython <3 → [Updates: <4]
• biosimulators-pysces >=0.1.25
• biosimulators-pyneuroml >=0.0.16
• biosimulators-rbapy >=0.0.4
• smoldyn >=2.67
• libroadrunner <2.2.0 → [Updates: <2.8.1]
• biosimulators-tellurium >=0.1.25
• biosimulators-xpp >=0.0.12

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