diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index 94e869e..f54bb1d 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -100,7 +100,7 @@ jobs: - name: Install the package run: | python -m pip install .[all] - python -m pip install amici + AMICI_PARALLEL_COMPILE="" python -m pip install amici ############################################# ## Lint @@ -169,6 +169,8 @@ jobs: run: python -m pip install .[tests] - name: Run the tests + env: + AMICI_PARALLEL_COMPILE: "" run: python -m pytest tests/ --cov=./biosimulators_amici/ --cov-report=xml - name: Upload the coverage report to Codecov diff --git a/Dockerfile b/Dockerfile index 733d3ef..fe89b9c 100644 --- a/Dockerfile +++ b/Dockerfile @@ -48,12 +48,13 @@ RUN apt-get update -y \ # Copy code for command-line interface into image and install it COPY . /root/Biosimulators_AMICI RUN pip install pip==23.0.1 -RUN SETUPTOOLS_SCM_PRETEND_VERSION_FOR_BIOSIMULATORS_AMICI=${VERSION} pip install sympy /root/Biosimulators_AMICI \ +RUN SETUPTOOLS_SCM_PRETEND_VERSION_FOR_BIOSIMULATORS_AMICI=${VERSION} pip install /root/Biosimulators_AMICI \ && rm -rf /root/Biosimulators_AMICI #RUN pip install sympy /root/Biosimulators_AMICI amici==${SIMULATOR_VERSION} \ # && rm -rf /root/Biosimulators_AMICI ENV VERBOSE=0 \ - MPLBACKEND=PDF + MPLBACKEND=PDF \ + AMICI_PARALLEL_COMPILE="" # Entrypoint ENTRYPOINT ["biosimulators-amici"]