chore: corrected documentation of observables

jonrkarr · jonrkarr · commit 14b8dbf7c02d · 2021-08-21T00:29:22.000-04:00
diff --git a/biosimulators.json b/biosimulators.json
@@ -154,6 +154,10 @@
                 {
                     "variables": "parameter values",
                     "targetPattern": "/sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter/@value"
+                },
+                {
+                    "variables": "compartment sizes",
+                    "targetPattern": "/sbml:sbml/sbml:model/sbml:listOfCompartments/sbml:compartment"
                 }
             ],
             "availableSoftwareInterfaceTypes": ["library", "command-line application",
@@ -232,6 +236,10 @@
                 {
                     "variables": "parameter values",
                     "targetPattern": "/sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter/@value"
+                },
+                {
+                    "variables": "compartment sizes",
+                    "targetPattern": "/sbml:sbml/sbml:model/sbml:listOfCompartments/sbml:compartment"
                 }
             ],
             "availableSoftwareInterfaceTypes": ["library", "command-line application",
@@ -294,6 +302,10 @@
                 {
                     "variables": "parameter values",
                     "targetPattern": "/sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter/@value"
+                },
+                {
+                    "variables": "compartment sizes",
+                    "targetPattern": "/sbml:sbml/sbml:model/sbml:listOfCompartments/sbml:compartment"
                 }
             ],
             "availableSoftwareInterfaceTypes": ["library", "command-line application",
@@ -356,6 +368,10 @@
                 {
                     "variables": "parameter values",
                     "targetPattern": "/sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter/@value"
+                },
+                {
+                    "variables": "compartment sizes",
+                    "targetPattern": "/sbml:sbml/sbml:model/sbml:listOfCompartments/sbml:compartment"
                 }
             ],
             "availableSoftwareInterfaceTypes": ["library", "command-line application",
@@ -418,6 +434,10 @@
                 {
                     "variables": "parameter values",
                     "targetPattern": "/sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter/@value"
+                },
+                {
+                    "variables": "compartment sizes",
+                    "targetPattern": "/sbml:sbml/sbml:model/sbml:listOfCompartments/sbml:compartment"
                 }
             ],
             "availableSoftwareInterfaceTypes": ["library", "command-line application",
@@ -480,6 +500,10 @@
                 {
                     "variables": "parameter values",
                     "targetPattern": "/sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter/@value"
+                },
+                {
+                    "variables": "compartment sizes",
+                    "targetPattern": "/sbml:sbml/sbml:model/sbml:listOfCompartments/sbml:compartment"
                 }
             ],
             "availableSoftwareInterfaceTypes": ["library", "command-line application",
@@ -542,6 +566,10 @@
                 {
                     "variables": "parameter values",
                     "targetPattern": "/sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter/@value"
+                },
+                {
+                    "variables": "compartment sizes",
+                    "targetPattern": "/sbml:sbml/sbml:model/sbml:listOfCompartments/sbml:compartment"
                 }
             ],
             "availableSoftwareInterfaceTypes": ["library", "command-line application",
@@ -620,6 +648,10 @@
                 {
                     "variables": "parameter values",
                     "targetPattern": "/sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter/@value"
+                },
+                {
+                    "variables": "compartment sizes",
+                    "targetPattern": "/sbml:sbml/sbml:model/sbml:listOfCompartments/sbml:compartment"
                 }
             ],
             "availableSoftwareInterfaceTypes": ["library", "command-line application",
@@ -698,6 +730,10 @@
                 {
                     "variables": "parameter values",
                     "targetPattern": "/sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter/@value"
+                },
+                {
+                    "variables": "compartment sizes",
+                    "targetPattern": "/sbml:sbml/sbml:model/sbml:listOfCompartments/sbml:compartment"
                 }
             ],
             "availableSoftwareInterfaceTypes": ["library", "command-line application",
diff --git a/biosimulators/Dockerfile b/biosimulators/Dockerfile
@@ -1,7 +1,7 @@
 # Base OS
 FROM python:3.9-slim-buster
 
-ARG VERSION=0.0.1
+ARG VERSION=0.0.2
 ARG SIMULATOR_VERSION=1.4.0
 ARG LIBSBML_VERSION=5.19.0
 
diff --git a/biosimulators/biosimulators_libsbmlsim/_version.py b/biosimulators/biosimulators_libsbmlsim/_version.py
@@ -1 +1 @@
-__version__ = '0.0.1'
+__version__ = '0.0.2'

Original file line number	Diff line number	Diff line change
`@@ -154,6 +154,10 @@`
`154`	`154`	`{`
`155`	`155`	`"variables": "parameter values",`
`156`	`156`	`"targetPattern": "/sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter/@value"`
	`157`	`+ },`
	`158`	`+ {`
	`159`	`+ "variables": "compartment sizes",`
	`160`	`+ "targetPattern": "/sbml:sbml/sbml:model/sbml:listOfCompartments/sbml:compartment"`
`157`	`161`	`}`
`158`	`162`	`],`
`159`	`163`	`"availableSoftwareInterfaceTypes": ["library", "command-line application",`
`@@ -232,6 +236,10 @@`
`232`	`236`	`{`
`233`	`237`	`"variables": "parameter values",`
`234`	`238`	`"targetPattern": "/sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter/@value"`
	`239`	`+ },`
	`240`	`+ {`
	`241`	`+ "variables": "compartment sizes",`
	`242`	`+ "targetPattern": "/sbml:sbml/sbml:model/sbml:listOfCompartments/sbml:compartment"`
`235`	`243`	`}`
`236`	`244`	`],`
`237`	`245`	`"availableSoftwareInterfaceTypes": ["library", "command-line application",`
`@@ -294,6 +302,10 @@`
`294`	`302`	`{`
`295`	`303`	`"variables": "parameter values",`
`296`	`304`	`"targetPattern": "/sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter/@value"`
	`305`	`+ },`
	`306`	`+ {`
	`307`	`+ "variables": "compartment sizes",`
	`308`	`+ "targetPattern": "/sbml:sbml/sbml:model/sbml:listOfCompartments/sbml:compartment"`
`297`	`309`	`}`
`298`	`310`	`],`
`299`	`311`	`"availableSoftwareInterfaceTypes": ["library", "command-line application",`
`@@ -356,6 +368,10 @@`
`356`	`368`	`{`
`357`	`369`	`"variables": "parameter values",`
`358`	`370`	`"targetPattern": "/sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter/@value"`
	`371`	`+ },`
	`372`	`+ {`
	`373`	`+ "variables": "compartment sizes",`
	`374`	`+ "targetPattern": "/sbml:sbml/sbml:model/sbml:listOfCompartments/sbml:compartment"`
`359`	`375`	`}`
`360`	`376`	`],`
`361`	`377`	`"availableSoftwareInterfaceTypes": ["library", "command-line application",`
`@@ -418,6 +434,10 @@`
`418`	`434`	`{`
`419`	`435`	`"variables": "parameter values",`
`420`	`436`	`"targetPattern": "/sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter/@value"`
	`437`	`+ },`
	`438`	`+ {`
	`439`	`+ "variables": "compartment sizes",`
	`440`	`+ "targetPattern": "/sbml:sbml/sbml:model/sbml:listOfCompartments/sbml:compartment"`
`421`	`441`	`}`
`422`	`442`	`],`
`423`	`443`	`"availableSoftwareInterfaceTypes": ["library", "command-line application",`
`@@ -480,6 +500,10 @@`
`480`	`500`	`{`
`481`	`501`	`"variables": "parameter values",`
`482`	`502`	`"targetPattern": "/sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter/@value"`
	`503`	`+ },`
	`504`	`+ {`
	`505`	`+ "variables": "compartment sizes",`
	`506`	`+ "targetPattern": "/sbml:sbml/sbml:model/sbml:listOfCompartments/sbml:compartment"`
`483`	`507`	`}`
`484`	`508`	`],`
`485`	`509`	`"availableSoftwareInterfaceTypes": ["library", "command-line application",`
`@@ -542,6 +566,10 @@`
`542`	`566`	`{`
`543`	`567`	`"variables": "parameter values",`
`544`	`568`	`"targetPattern": "/sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter/@value"`
	`569`	`+ },`
	`570`	`+ {`
	`571`	`+ "variables": "compartment sizes",`
	`572`	`+ "targetPattern": "/sbml:sbml/sbml:model/sbml:listOfCompartments/sbml:compartment"`
`545`	`573`	`}`
`546`	`574`	`],`
`547`	`575`	`"availableSoftwareInterfaceTypes": ["library", "command-line application",`
`@@ -620,6 +648,10 @@`
`620`	`648`	`{`
`621`	`649`	`"variables": "parameter values",`
`622`	`650`	`"targetPattern": "/sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter/@value"`
	`651`	`+ },`
	`652`	`+ {`
	`653`	`+ "variables": "compartment sizes",`
	`654`	`+ "targetPattern": "/sbml:sbml/sbml:model/sbml:listOfCompartments/sbml:compartment"`
`623`	`655`	`}`
`624`	`656`	`],`
`625`	`657`	`"availableSoftwareInterfaceTypes": ["library", "command-line application",`
`@@ -698,6 +730,10 @@`
`698`	`730`	`{`
`699`	`731`	`"variables": "parameter values",`
`700`	`732`	`"targetPattern": "/sbml:sbml/sbml:model/sbml:listOfParameters/sbml:parameter/@value"`
	`733`	`+ },`
	`734`	`+ {`
	`735`	`+ "variables": "compartment sizes",`
	`736`	`+ "targetPattern": "/sbml:sbml/sbml:model/sbml:listOfCompartments/sbml:compartment"`
`701`	`737`	`}`
`702`	`738`	`],`
`703`	`739`	`"availableSoftwareInterfaceTypes": ["library", "command-line application",`
Original file line number	Diff line number	Diff line change
`@@ -1 +1 @@`
`1`		`-__version__ = '0.0.1'`
	`1`	`+__version__ = '0.0.2'`