chore: improved titles of tutorials

Author: jonrkarr

tutorials/Programmatically executing COMBINE-OMEX archives.ipynb

@@ -5,7 +5,7 @@
    "id": "4d20a3c2",
    "metadata": {},
    "source": [
-    "# Executing COMBINE/OMEX archives"
+    "# Programmatically executing COMBINE/OMEX archives"
    ]
   },
   {
@@ -1157,7 +1157,7 @@
       "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: StandardOutputNotLoggedWarning: \u001b[33mStandard output and error could not be logged because capturer is not installed. To install capturer, install BioSimulators utils with the `logging` option (`pip install biosimulators-utils[logging]`).\u001b[0m\n",
       "  warnings.warn(termcolor.colored(message, Colors.warning.value), category)\n",
       "/usr/local/lib/python3.9/site-packages/biosimulators_utils/warnings.py:31: BioSimulatorsWarning: \u001b[33mModel `Ciliberto2003_Morphogenesis` may be invalid.\n",
-      "  - The model file `/tmp/tmp015qkisj.xml` may be invalid.\n",
+      "  - The model file `/tmp/tmplxry5gfe.xml` may be invalid.\n",
       "    - The value of the 'sboTerm' attribute on a <species> is expected to be an SBO identifier (http://www.biomodels.net/SBO/). In SBML Level 2 prior to Version 4 it is expected to refer to a participant physical type (i.e., terms derived from SBO:0000236, \"participant physical type\"); in Versions 4 and above it is expected to refer to a material entity (i.e., terms derived from SBO:0000240, \"material entity\").\n",
       "      Reference: L2V4 Section 5\n",
       "       SBO term 'SBO:0000014' on the <species> is not in the appropriate branch.\n",
@@ -1650,7 +1650,22 @@
       "    - As a principle of best modeling practice, the units of a <parameter> should be declared rather than be left undefined. Doing so improves the ability of software to check the consistency of units and helps make it easier to detect potential errors in models.\n",
       "       The <parameter> with the id 'Swe1T' does not have a 'units' attribute.\n",
       "      \u001b[0m\n",
-      "  warnings.warn(termcolor.colored(message, Colors.warning.value), category)\n",
+      "  warnings.warn(termcolor.colored(message, Colors.warning.value), category)\n"
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      " \u001b[34msucceeded\u001b[0m\n",
+      "    Generating 5 outputs ...\n",
+      "      Generating output 1: `report` ..."
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
       "/usr/local/lib/python3.9/site-packages/kisao/utils.py:477: AlgorithmSubstitutedWarning: \u001b[33m'LSODA/LSODAR hybrid method' (KISAO_0000560) will be substituted for 'CVODE'' (KISAO_0000019) at substitution policy 'SIMILAR_VARIABLES'.\u001b[0m\n",
       "  warnings.warn(termcolor.colored(msg, 'yellow'), AlgorithmSubstitutedWarning)\n"
      ]
@@ -1660,8 +1675,6 @@
      "output_type": "stream",
      "text": [
       " \u001b[34msucceeded\u001b[0m\n",
-      "    Generating 5 outputs ...\n",
-      "      Generating output 1: `report` ... \u001b[34msucceeded\u001b[0m\n",
       "      Generating output 2: `Figure_3a` ... \u001b[34msucceeded\u001b[0m\n",
       "      Generating output 3: `Figure_3b` ... \u001b[34msucceeded\u001b[0m\n",
       "      Generating output 4: `Figure_3c` ... \u001b[34msucceeded\u001b[0m\n",
@@ -1733,7 +1746,7 @@
     {
      "data": {
       "text/plain": [
-       "[<matplotlib.lines.Line2D at 0x7f3a2921da30>]"
+       "[<matplotlib.lines.Line2D at 0x7fa6a5a104c0>]"
       ]
      },
      "execution_count": 7,

tutorials/Programmatically getting information about simulation tools from BioSimulators.ipynb

@@ -5,7 +5,7 @@
    "id": "0a9798c3-8eb6-4a59-8c43-5b187caa1c48",
    "metadata": {},
    "source": [
-    "# Retrieving information about simulation tools registered with BioSimulators"
+    "# Programmatically retrieving information about simulation tools registered with BioSimulators"
    ]
   },
   {