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feat: organized tutorials
1 parent 2a3c2d2 commit 84299c9

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‎.gitignore‎

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tutorials/Introspecting models.ipynb renamed to tutorials/1. Introspecting models/Introspecting models.ipynb

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"id": "b1645394-c6e2-47a6-91d3-311861effb30",
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"Execute the following code to introspect the Systems Biology Markup Language (SBML) file for the [Ciliberto et al. morphogenesis checkpoint model](data/Ciliberto-J-Cell-Biol-2003-morphogenesis-checkpoint-continuous.xml)."
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"Execute the following code to introspect the Systems Biology Markup Language (SBML) file for the [Ciliberto et al. morphogenesis checkpoint model](../_data/Ciliberto-J-Cell-Biol-2003-morphogenesis-checkpoint-continuous.xml)."
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tutorials/Programatically creating SED-ML and COMBINE archives from model files.ipynb renamed to tutorials/2. Creating simulations/Programmatically creating SED-ML and COMBINE archives from model files.ipynb

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"These tools are easy to use. However, they provide investigators little flexibility to customize the generation of COMBINE/OMEX archives and SED-ML files, such as to bundle simulations of multiple model files into a single COMBINE/OMEX archive. The BioSimulators-utils Python API provides additional flexibility to customize the creation of COMBINE/OMEX archives.\n",
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"This tutorial illustrates how to use the BioSimulators-utils API to programmatically create COMBINE/OMEX archives from model files by illustrating the construction of a COMBINE/OMEX archive for a [flux balance model of the core metabolism of Escherichia coli](data/Escherichia-coli-core-metabolism.xml) encoded in SBML."
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"This tutorial illustrates how to use the BioSimulators-utils API to programmatically create COMBINE/OMEX archives from model files by illustrating the construction of a COMBINE/OMEX archive for a [flux balance model of the core metabolism of Escherichia coli](../_data/Escherichia-coli-core-metabolism.xml) encoded in SBML."
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"SBML3 load time: 0.191\n",
30603060
"\n",
30613061
"\n",
3062-
"gplk_constructLPfromFBA time: 0.013360738754272461\n",
3062+
"gplk_constructLPfromFBA time: 0.013333559036254883\n",
30633063
"\n",
30643064
"\n",
30653065
"glpk_analyzeModel FBA --> LP time: 4.76837158203125e-07\n",

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