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README.md

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This repository contains Jupyter notebooks with tutorials for the Python APIs for the simulation tools registered with BioSimulators and a Jupyter notebook server for running the notebooks.
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The tutorials are located in the [`tutorials`](tutorials) subdirectory. The [README](tutorials/README.md) in this directory summarizes the content of the tutorials.
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## Getting started
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### Running the tutorials online with Binder

tutorials/README.md

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# BioSimulators tutorials
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This package provides several tutorials for BioSimulators Python APIs for simulation tools and BioSimulators-utils.
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* Introspecting model/simulation files
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* [Extracting the possible inputs and outputs of simulations from model/simulation files](Introspecting models.ipynb)
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* [Extracting descriptions of simulations and plots from model/simulation files](Introspecting models.ipynb)
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* Creating simulation projects
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* [Programatically creating SED-ML and COMBINE archives from model files](Programatically creating SED-ML and COMBINE archives from model files.ipynb)
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* Identifying suitable simulation tools
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* [Programmatically getting information about the capabilities of simulation tools (supported model formats, modeling frameworks, simulation types, simulation algorithms) from BioSimulators](Programmatically getting information about simulation tools from BioSimulators.ipynb)
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* Executing simulations
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* [Programatically executing individual simulations](Programmatically executing individual simulations.ipynb)
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* [Programmatically executing entire simulation projects (COMBINE/OMEX archives that contain one or more models and one or more simulations in SED-ML format)](Programmatically executing simulation projects.ipynb)

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