feat: added tutorial on programatically creating SED-ML and COMBINE archives from model files

jonrkarr · jonrkarr · commit e4b9f7e0adfd · 2021-09-25T19:04:22.000-04:00
diff --git a/.gitignore b/.gitignore
@@ -6,3 +6,4 @@ tutorials/.ipynb_checkpoints/
 tutorials/.ipython/
 tutorials/.jupyter/
 tutorials/.local/
+tutorials/tmp/
diff --git a/requirements.txt b/requirements.txt
@@ -4,11 +4,15 @@ jupyterhub
 jupyterlab
 
 # requirements for notebooks
+biopython
+biosimulators-cbmpy
 biosimulators-copasi
 biosimulators-cobrapy
 biosimulators-tellurium
-biosimulators-utils
+biosimulators-utils[sbml,logging,containers]
+ipython
 kisao
+numpy
 matplotlib
 pyyaml
 requests
diff --git a/tutorials/Programatically creating SED-ML and COMBINE archives from model files.ipynb b/tutorials/Programatically creating SED-ML and COMBINE archives from model files.ipynb
