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Fixed warnings
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tests/fixtures/sbml-list-of-species-lvl-2.xml

Lines changed: 42 additions & 4 deletions
Original file line numberDiff line numberDiff line change
@@ -1,6 +1,39 @@
11
<?xml version='1.0' encoding='UTF-8' standalone='no'?>
22
<sbml xmlns="http://www.sbml.org/sbml/level2/version4" level="2" version="4">
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<model id="Ciliberto2003_Morphogenesis" name="Ciliberto2003_Morphogenesis_Checkpoint">
4+
<listOfUnitDefinitions>
5+
<unitDefinition id="volume" name="volume">
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<listOfUnits>
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<unit kind="litre" exponent="1" scale="-3" multiplier="1"/>
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</listOfUnits>
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</unitDefinition>
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<unitDefinition id="time" name="time">
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<listOfUnits>
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<unit kind="second" exponent="1" scale="0" multiplier="1"/>
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</listOfUnits>
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</unitDefinition>
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<unitDefinition id="substance" name="substance">
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<listOfUnits>
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<unit kind="mole" exponent="1" scale="-9" multiplier="1"/>
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</listOfUnits>
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</unitDefinition>
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<unitDefinition id="unit_0" name="mg">
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<listOfUnits>
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<unit kind="gram" exponent="1" scale="-3" multiplier="1"/>
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</listOfUnits>
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</unitDefinition>
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<unitDefinition id="millilitre" name="ml">
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<listOfUnits>
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<unit kind="litre" exponent="1" scale="-3" multiplier="1"/>
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</listOfUnits>
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</unitDefinition>
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<unitDefinition id="molsPerSecond" name="mols/s">
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<listOfUnits>
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<unit kind="mole" exponent="1" scale="-9" multiplier="1"/>
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<unit kind="second" exponent="-1" scale="0" multiplier="1"/>
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</listOfUnits>
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</unitDefinition>
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</listOfUnitDefinitions>
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<listOfCompartments>
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<compartment id="compartment" size="1"/>
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</listOfCompartments>
@@ -21,21 +54,26 @@
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<listOfReactions>
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<reaction metaid="COPASI127" id="lumen" name="01. StomachLumen -&gt; IntestineLumen" reversible="false" fast="false">
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<listOfReactants>
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<speciesReference species="Trim" stoichiometry="1" constant="true"/>
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<speciesReference species="Clb" stoichiometry="1"/>
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<speciesReference species="Sic" stoichiometry="1"/>
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</listOfReactants>
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<listOfProducts>
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<speciesReference species="Clb" stoichiometry="1" constant="true"/>
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<speciesReference species="Trim" stoichiometry="1"/>
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</listOfProducts>
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<kineticLaw>
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<math xmlns="http://www.w3.org/1998/Math/MathML">
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<apply>
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<times/>
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<ci> k1 </ci>
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<ci> Trim </ci>
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<apply>
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<divide/>
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<ci> Clb </ci>
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<ci> Sic </ci>
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</apply>
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</apply>
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</math>
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<listOfParameters>
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<parameter id="k1" name="k1" value="350"/>
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<parameter id="k1" name="k1" value="350" units="molsPerSecond"/>
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</listOfParameters>
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</kineticLaw>
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</reaction>

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