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1 | 1 | <?xml version='1.0' encoding='UTF-8' standalone='no'?> |
2 | 2 | <sbml xmlns="http://www.sbml.org/sbml/level2/version4" level="2" version="4"> |
3 | 3 | <model id="Ciliberto2003_Morphogenesis" name="Ciliberto2003_Morphogenesis_Checkpoint"> |
| 4 | + <listOfUnitDefinitions> |
| 5 | + <unitDefinition id="volume" name="volume"> |
| 6 | + <listOfUnits> |
| 7 | + <unit kind="litre" exponent="1" scale="-3" multiplier="1"/> |
| 8 | + </listOfUnits> |
| 9 | + </unitDefinition> |
| 10 | + <unitDefinition id="time" name="time"> |
| 11 | + <listOfUnits> |
| 12 | + <unit kind="second" exponent="1" scale="0" multiplier="1"/> |
| 13 | + </listOfUnits> |
| 14 | + </unitDefinition> |
| 15 | + <unitDefinition id="substance" name="substance"> |
| 16 | + <listOfUnits> |
| 17 | + <unit kind="mole" exponent="1" scale="-9" multiplier="1"/> |
| 18 | + </listOfUnits> |
| 19 | + </unitDefinition> |
| 20 | + <unitDefinition id="unit_0" name="mg"> |
| 21 | + <listOfUnits> |
| 22 | + <unit kind="gram" exponent="1" scale="-3" multiplier="1"/> |
| 23 | + </listOfUnits> |
| 24 | + </unitDefinition> |
| 25 | + <unitDefinition id="millilitre" name="ml"> |
| 26 | + <listOfUnits> |
| 27 | + <unit kind="litre" exponent="1" scale="-3" multiplier="1"/> |
| 28 | + </listOfUnits> |
| 29 | + </unitDefinition> |
| 30 | + <unitDefinition id="molsPerSecond" name="mols/s"> |
| 31 | + <listOfUnits> |
| 32 | + <unit kind="mole" exponent="1" scale="-9" multiplier="1"/> |
| 33 | + <unit kind="second" exponent="-1" scale="0" multiplier="1"/> |
| 34 | + </listOfUnits> |
| 35 | + </unitDefinition> |
| 36 | + </listOfUnitDefinitions> |
4 | 37 | <listOfCompartments> |
5 | 38 | <compartment id="compartment" size="1"/> |
6 | 39 | </listOfCompartments> |
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21 | 54 | <listOfReactions> |
22 | 55 | <reaction metaid="COPASI127" id="lumen" name="01. StomachLumen -> IntestineLumen" reversible="false" fast="false"> |
23 | 56 | <listOfReactants> |
24 | | - <speciesReference species="Trim" stoichiometry="1" constant="true"/> |
| 57 | + <speciesReference species="Clb" stoichiometry="1"/> |
| 58 | + <speciesReference species="Sic" stoichiometry="1"/> |
25 | 59 | </listOfReactants> |
26 | 60 | <listOfProducts> |
27 | | - <speciesReference species="Clb" stoichiometry="1" constant="true"/> |
| 61 | + <speciesReference species="Trim" stoichiometry="1"/> |
28 | 62 | </listOfProducts> |
29 | 63 | <kineticLaw> |
30 | 64 | <math xmlns="http://www.w3.org/1998/Math/MathML"> |
31 | 65 | <apply> |
32 | 66 | <times/> |
33 | 67 | <ci> k1 </ci> |
34 | | - <ci> Trim </ci> |
| 68 | + <apply> |
| 69 | + <divide/> |
| 70 | + <ci> Clb </ci> |
| 71 | + <ci> Sic </ci> |
| 72 | + </apply> |
35 | 73 | </apply> |
36 | 74 | </math> |
37 | 75 | <listOfParameters> |
38 | | - <parameter id="k1" name="k1" value="350"/> |
| 76 | + <parameter id="k1" name="k1" value="350" units="molsPerSecond"/> |
39 | 77 | </listOfParameters> |
40 | 78 | </kineticLaw> |
41 | 79 | </reaction> |
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