📝 update README.md

Author: enryH

README.md

@@ -1,22 +1,12 @@
-<h1>
-  <picture>
-    <source media="(prefers-color-scheme: dark)" srcset="docs/images/nf-core-proteomicsanalysis_logo_dark.png">
-    <img alt="nf-core/proteomicsanalysis" src="docs/images/nf-core-proteomicsanalysis_logo_light.png">
-  </picture>
-</h1>
-
-[![GitHub Actions CI Status](https://github.com/nf-core/proteomicsanalysis/actions/workflows/nf-test.yml/badge.svg)](https://github.com/nf-core/proteomicsanalysis/actions/workflows/nf-test.yml)
-[![GitHub Actions Linting Status](https://github.com/nf-core/proteomicsanalysis/actions/workflows/linting.yml/badge.svg)](https://github.com/nf-core/proteomicsanalysis/actions/workflows/linting.yml)[![AWS CI](https://img.shields.io/badge/CI%20tests-full%20size-FF9900?labelColor=000000&logo=Amazon%20AWS)](https://nf-co.re/proteomicsanalysis/results)[![Cite with Zenodo](http://img.shields.io/badge/DOI-10.5281/zenodo.XXXXXXX-1073c8?labelColor=000000)](https://doi.org/10.5281/zenodo.XXXXXXX)
-[![nf-test](https://img.shields.io/badge/unit_tests-nf--test-337ab7.svg)](https://www.nf-test.com)
+# Demo pipeline using acore and VueGen
 
 [![Nextflow](https://img.shields.io/badge/version-%E2%89%A524.10.5-green?style=flat&logo=nextflow&logoColor=white&color=%230DC09D&link=https%3A%2F%2Fnextflow.io)](https://www.nextflow.io/)
 [![nf-core template version](https://img.shields.io/badge/nf--core_template-3.3.2-green?style=flat&logo=nfcore&logoColor=white&color=%2324B064&link=https%3A%2F%2Fnf-co.re)](https://github.com/nf-core/tools/releases/tag/3.3.2)
-[![run with conda](http://img.shields.io/badge/run%20with-conda-3EB049?labelColor=000000&logo=anaconda)](https://docs.conda.io/en/latest/)
+[![run with conda](https://img.shields.io/badge/run%20with-conda-3EB049?labelColor=000000&logo=anaconda)](https://docs.conda.io/en/latest/)
+
 [![run with docker](https://img.shields.io/badge/run%20with-docker-0db7ed?labelColor=000000&logo=docker)](https://www.docker.com/)
 [![run with singularity](https://img.shields.io/badge/run%20with-singularity-1d355c.svg?labelColor=000000)](https://sylabs.io/docs/)
-[![Launch on Seqera Platform](https://img.shields.io/badge/Launch%20%F0%9F%9A%80-Seqera%20Platform-%234256e7)](https://cloud.seqera.io/launch?pipeline=https://github.com/nf-core/proteomicsanalysis)
-
-[![Get help on Slack](http://img.shields.io/badge/slack-nf--core%20%23proteomicsanalysis-4A154B?labelColor=000000&logo=slack)](https://nfcore.slack.com/channels/proteomicsanalysis)[![Follow on Bluesky](https://img.shields.io/badge/bluesky-%40nf__core-1185fe?labelColor=000000&logo=bluesky)](https://bsky.app/profile/nf-co.re)[![Follow on Mastodon](https://img.shields.io/badge/mastodon-nf__core-6364ff?labelColor=FFFFFF&logo=mastodon)](https://mstdn.science/@nf_core)[![Watch on YouTube](http://img.shields.io/badge/youtube-nf--core-FF0000?labelColor=000000&logo=youtube)](https://www.youtube.com/c/nf-core)
+[![Launch on Seqera Platform](https://img.shields.io/badge/Launch%20%F0%9F%9A%80-Seqera%20Platform-%234256e7)](https://cloud.seqera.io/launch?pipeline=https://github.com/biosustain/dsp_demo_nf_acore_vuegen)
 
 ## Introduction
 
@@ -58,9 +48,9 @@ Now, you can run the pipeline using:
 <!-- TODO nf-core: update the following command to include all required parameters for a minimal example -->
 
 ```bash
-nextflow run nf-core/proteomicsanalysis \
+nextflow run biosustain/dsp_demo_nf_acore_vuegen \
    -profile <docker/singularity/.../institute> \
-   --input samplesheet.csv \
+   --input_csv lfq_data.csv \
    --outdir <OUTDIR>
 ```
 
@@ -71,13 +61,11 @@ For more details and further functionality, please refer to the [usage documenta
 
 ## Pipeline output
 
-To see the results of an example test run with a full size dataset refer to the [results](https://nf-co.re/proteomicsanalysis/results) tab on the nf-core website pipeline page.
-For more details about the output files and reports, please refer to the
-[output documentation](https://nf-co.re/proteomicsanalysis/output).
+...
 
 ## Credits
 
-nf-core/proteomicsanalysis was originally written by Henry Webel.
+biosustain/dsp_demo_nf_acore_vuegen was originally written by Henry Webel.
 
 We thank the following people for their extensive assistance in the development of this pipeline: