RC7

[kellrott]

• allele
  • Need CCLE alleles
  • Need G2P alleles
• celllines
• ctrp
• ensembl
• gdsc
• mc3
  • DELETE (replaced with GDC MAF files)
• normalize (deleted)
• pharmacodb
• publication
  • Review and DELETE
• callsetSummary
• chembl
• dgidb
• g2p
  • Plans for updates
• go
  • Needs review
• mondo
• pathway_commons
• phenotype
  • Old merger step, review for deletion
• pubmed
• ccle
  • review for deletion (replaced with depmap?)
• compound
  • Delete and replace with chembl transform?
• gdc
  • Review
  • Compound information/linkage
• gtex
  • Case converter
  • Sample converter
  • Gene level TPM
  • Transcript level TPM
• msigdb
• pfam
  • Review for deletion and replace with interpro transform
• prism
  • Write download script
  • Write level one transform
  • Write level two transform
  • Link to Depmap cellline data
• tcga
  • DELETE