1- Version 0.2 - September 3, 2011
1+ Version 0.2 - September 3, 2016
22-----------
33
44Version 0.2 of WASP is a major update to the code,
@@ -8,21 +8,21 @@ strongly recommended that users switch to this version
88of the pipline.
99
1010Changes include:
11- * re-wrote mapping scripts to make simpler and more modular
12- * re-wrote mapping test scripts and added of many tests
13- * fixed several mapping pipeline bugs related to paired-end reads
14- * find_intersecting_snps.py window size no longer required (is now
11+ * re-wrote mapping scripts to make simpler and more modular
12+ * re-wrote mapping test scripts and added of many tests
13+ * fixed several mapping pipeline bugs related to paired-end reads
14+ * find_intersecting_snps.py window size no longer required (is now
1515 unlimited)
16- * find_intersecting_snps.py can now take HDF5 files as input
17- * find_intersecting_snps.py can now consider only haplotypes
16+ * find_intersecting_snps.py can now take HDF5 files as input
17+ * find_intersecting_snps.py can now consider only haplotypes
1818 present in samples, rather than all possible allelic combinations
1919 of SNPs overlapping reads.
20- * added get_as_counts.py script that outputs allele-specific read
20+ * added get_as_counts.py script that outputs allele-specific read
2121 counts at all polymorphic SNPs.
22- * snp2h5 now records sample info in output HDF5 files
23- * improved speed of many CHT pipeline steps
24- * improved stability of CHT dispersion parameter estimation
25- * added Snakemake workflows for both mapping and CHT pipelines
22+ * snp2h5 now records sample info in output HDF5 files
23+ * improved speed of many CHT pipeline steps
24+ * improved stability of CHT dispersion parameter estimation
25+ * added Snakemake workflows for both mapping and CHT pipelines
2626
2727
2828Version 0.1
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