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Copy file name to clipboardExpand all lines: CHANGELOG.md
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Version 0.3.0 - July 3, 2018
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This release moves the codebase from Python2 to Python3 and includes several additional improvements.
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Changes include:
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* Switch to Python3 from Python2
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* Switch to PyTables version 3
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* General cleanup of code to conform to PEP8 style
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* Better matching of VCF files to chromosomes in snp2h5 (uses name of chromosome within VCF, rather than relying on filename)
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* add --txt_counts option to bam2h5.py as a simple way to obtain a file with allele-specific counts. The bam2h5.py should now be used instead of the get_as_counts.py script (which double counts reads that overlap multiple SNPs).
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