NAMESPACE

# Generated by roxygen2: do not edit by hand

export(AncestryCheck)
export(ClumpLD)
export(ComputeGeneticPC)
export(ComputeLD)
export(ComputePGS)
export(DiffZeroOne)
export(DummyCovar)
export(EstimateHerit)
export(FilterAllele)
export(FilterPlinkSample)
export(FilterRegion)
export(FilterSNP)
export(GXWASmiami)
export(GXwas)
export(GeneticCorrBT)
export(GetMFPlink)
export(LDPrune)
export(MAFdiffSexControl)
export(MergeRegion)
export(MetaGWAS)
export(PlinkSummary)
export(PvalComb)
export(QCsample)
export(QCsnp)
export(SexCheck)
export(SexDiff)
export(SexDiffZscore)
export(SexRegress)
export(SumstatGenCorr)
export(TestXGene)
export(Xhwe)
export(detect_os_type)
export(executePlinkMAF)
export(plinkVCF)
export(validate_reference_data)
importFrom(BiocStyle,html_document)
importFrom(GenomeInfoDb,getChromInfoFromUCSC)
importFrom(GenomicRanges,makeGRangesFromDataFrame)
importFrom(Matrix,sparseMatrix)
importFrom(R.utils,bunzip2)
importFrom(Rdpack,reprompt)
importFrom(Rsamtools,bgzip)
importFrom(Rsamtools,indexTabix)
importFrom(SNPRelate,snpgdsBED2GDS)
importFrom(SNPRelate,snpgdsGetGeno)
importFrom(SNPRelate,snpgdsOpen)
importFrom(bigparallelr,nb_cores)
importFrom(bigsnpr,coef_to_liab)
importFrom(bigsnpr,snp_attach)
importFrom(bigsnpr,snp_ldsc2)
importFrom(bigsnpr,snp_match)
importFrom(bigsnpr,snp_readBed)
importFrom(cli,cli_progress_bar)
importFrom(cli,cli_progress_done)
importFrom(cli,cli_progress_update)
importFrom(cli,pb_bar)
importFrom(cli,pb_current)
importFrom(cli,pb_percent)
importFrom(cli,pb_total)
importFrom(data.table,.SD)
importFrom(data.table,as.data.table)
importFrom(data.table,data.table)
importFrom(data.table,fread)
importFrom(data.table,rbindlist)
importFrom(dplyr,arrange)
importFrom(dplyr,case_when)
importFrom(dplyr,distinct)
importFrom(dplyr,everything)
importFrom(dplyr,filter)
importFrom(dplyr,mutate)
importFrom(dplyr,n)
importFrom(dplyr,row_number)
importFrom(dplyr,select)
importFrom(dplyr,summarise)
importFrom(foreach,"%dopar%")
importFrom(gdsfmt,index.gdsn)
importFrom(gdsfmt,read.gdsn)
importFrom(gdsfmt,showfile.gds)
importFrom(ggplot2,aes)
importFrom(ggplot2,aes_string)
importFrom(ggplot2,coord_equal)
importFrom(ggplot2,element_blank)
importFrom(ggplot2,element_rect)
importFrom(ggplot2,element_text)
importFrom(ggplot2,expansion)
importFrom(ggplot2,geom_bar)
importFrom(ggplot2,geom_density)
importFrom(ggplot2,geom_errorbar)
importFrom(ggplot2,geom_errorbarh)
importFrom(ggplot2,geom_hline)
importFrom(ggplot2,geom_point)
importFrom(ggplot2,geom_rect)
importFrom(ggplot2,geom_smooth)
importFrom(ggplot2,geom_text)
importFrom(ggplot2,geom_vline)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,ggsave)
importFrom(ggplot2,ggtitle)
importFrom(ggplot2,guide_legend)
importFrom(ggplot2,guides)
importFrom(ggplot2,labs)
importFrom(ggplot2,scale_color_manual)
importFrom(ggplot2,scale_fill_gradient2)
importFrom(ggplot2,scale_fill_manual)
importFrom(ggplot2,scale_shape_manual)
importFrom(ggplot2,scale_size_manual)
importFrom(ggplot2,scale_y_continuous)
importFrom(ggplot2,scale_y_reverse)
importFrom(ggplot2,theme)
importFrom(ggplot2,theme_classic)
importFrom(ggplot2,theme_light)
importFrom(ggplot2,theme_minimal)
importFrom(ggplot2,xlab)
importFrom(ggplot2,xlim)
importFrom(ggplot2,ylab)
importFrom(ggplot2,ylim)
importFrom(ggpubr,annotate_figure)
importFrom(ggpubr,ggarrange)
importFrom(ggpubr,stat_cor)
importFrom(ggpubr,stat_regline_equation)
importFrom(ggpubr,text_grob)
importFrom(ggrepel,geom_text_repel)
importFrom(grDevices,dev.off)
importFrom(grDevices,jpeg)
importFrom(grDevices,pdf)
importFrom(graphics,abline)
importFrom(graphics,arrows)
importFrom(graphics,axis)
importFrom(graphics,par)
importFrom(graphics,points)
importFrom(grid,grid.draw)
importFrom(grid,grid.newpage)
importFrom(grid,unit)
importFrom(gridExtra,arrangeGrob)
importFrom(gridExtra,grid.arrange)
importFrom(magrittr,"%>%")
importFrom(parallel,clusterCall)
importFrom(parallel,clusterExport)
importFrom(parallel,makeCluster)
importFrom(parallel,parLapply)
importFrom(parallel,stopCluster)
importFrom(plyranges,join_overlap_intersect)
importFrom(poolr,bonferroni)
importFrom(poolr,stouffer)
importFrom(progress,progress_bar)
importFrom(qqman,manhattan)
importFrom(qqman,qq)
importFrom(regioneR,toGRanges)
importFrom(rlang,.data)
importFrom(rlang,abort)
importFrom(rlang,format_error_bullets)
importFrom(rlang,inform)
importFrom(rlang,warn)
importFrom(stats,binomial)
importFrom(stats,cor)
importFrom(stats,dnorm)
importFrom(stats,glm)
importFrom(stats,lm)
importFrom(stats,logLik)
importFrom(stats,median)
importFrom(stats,na.exclude)
importFrom(stats,na.omit)
importFrom(stats,p.adjust)
importFrom(stats,pchisq)
importFrom(stats,pnorm)
importFrom(stats,predict)
importFrom(stats,pt)
importFrom(stats,qchisq)
importFrom(stats,qnorm)
importFrom(stats,rnorm)
importFrom(stats,sd)
importFrom(stats,setNames)
importFrom(stringr,str_detect)
importFrom(stringr,str_remove)
importFrom(stringr,str_sub)
importFrom(sumFREGAT,ACAT)
importFrom(sumFREGAT,BT)
importFrom(sumFREGAT,FLM)
importFrom(sumFREGAT,PCA)
importFrom(sumFREGAT,SKAT)
importFrom(sumFREGAT,SKATO)
importFrom(sumFREGAT,minp)
importFrom(sumFREGAT,simpleM)
importFrom(sumFREGAT,sumchi)
importFrom(sys,exec_wait)
importFrom(tidyr,pivot_longer)
importFrom(utils,read.table)
importFrom(utils,setTxtProgressBar)
importFrom(utils,txtProgressBar)
importFrom(utils,write.table)
importFrom(vroom,vroom)