support saving germline genes

Author: bprize15

src/main/webapp/app/components/tabs/CurationToolsTab.tsx

@@ -209,7 +209,7 @@ export function CurationToolsTab({
           {!isGermline && (
             <Row className="border-top pt-3">
               <Col>
-                <SaveGeneButton hugoSymbol={hugoSymbol} />
+                <SaveGeneButton isGermline={isGermline} hugoSymbol={hugoSymbol} />
               </Col>
             </Row>
           )}

src/main/webapp/app/components/tabs/GeneListPageToolsTab.tsx

@@ -92,10 +92,10 @@ function GeneListPageToolsTab({ metaData, isDev, createGene, isGermline }: IGene
           <EvidenceDownloader />
         </div>
       </Row>
-      {!isGermline && isDev && (
+      {isDev && (
         <Row className="pt-3 border-top mb-3">
           <div>
-            <SaveGeneButton />
+            <SaveGeneButton isGermline={isGermline!} />
           </div>
         </Row>
       )}

src/main/webapp/app/service/firebase/firebase-gene-service.ts

@@ -686,6 +686,7 @@ export class FirebaseGeneService {
     );
     const data = searchResponse.data;
     const args: Parameters<typeof getDriveAnnotations>[1] = {
+      isGermline: isGermlineProp,
       gene: nullableGene == null ? undefined : nullableGene,
       vus: nullableVus == null ? undefined : Object.values(nullableVus),
       releaseGene: data.some(gene => geneIsReleased(gene, isGermlineProp)),

src/main/webapp/app/shared/button/SaveGeneButton.tsx

@@ -7,16 +7,16 @@ import { AsyncSaveButton } from './AsyncSaveButton';
 import { notifyError, notifySuccess } from 'app/oncokb-commons/components/util/NotificationUtils';
 
 type ISaveGeneButtonProps = StoreProps & {
+  isGermline: boolean;
   hugoSymbol?: string;
 } & ButtonProps &
   Omit<React.HTMLAttributes<HTMLButtonElement>, 'onClick' | 'disabled'>;
 
-function SaveGeneButton({ hugoSymbol, firebaseGeneService, ...buttonProps }: ISaveGeneButtonProps) {
+function SaveGeneButton({ isGermline, hugoSymbol, firebaseGeneService, ...buttonProps }: ISaveGeneButtonProps) {
   const [isSavePending, setIsSavePending] = useState(false);
   const onClickHandler = useCallback(async () => {
     setIsSavePending(true);
     try {
-      const isGermline = false;
       if (hugoSymbol === undefined) {
         await firebaseGeneService?.saveAllGenes(isGermline);
         notifySuccess('All genes saved!');

src/main/webapp/app/shared/util/core-drive-annotation-submission/core-drive-annotation-submission.ts

@@ -134,12 +134,12 @@ function getDrugsByUuids(keys: string[][], drugList: DrugCollection): Drug[][] {
   });
 }
 
-export type DriveAnnotation = { gene: string | undefined; vus: string | undefined; releaseGene: boolean };
+export type DriveAnnotation = { gene: string | undefined; vus: string | undefined; releaseGene: boolean; germline: boolean | undefined };
 export function getDriveAnnotations(
   drugList: DrugCollection,
-  { gene, vus, releaseGene }: { gene: Gene | undefined; vus: Vus[] | undefined; releaseGene: boolean },
+  { gene, vus, releaseGene, isGermline }: { gene: Gene | undefined; vus: Vus[] | undefined; releaseGene: boolean; isGermline: boolean },
 ): DriveAnnotation {
-  const params: DriveAnnotation = { gene: undefined, vus: undefined, releaseGene: false };
+  const params: DriveAnnotation = { gene: undefined, vus: undefined, releaseGene: false, germline: undefined };
   if (gene !== undefined) {
     const geneData = getGeneData(gene, drugList);
     if (geneData !== undefined) {
@@ -152,5 +152,8 @@ export function getDriveAnnotations(
   if (releaseGene) {
     params.releaseGene = releaseGene;
   }
+  if (isGermline) {
+    params.germline = isGermline;
+  }
   return params;
 }