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add ref allele to name but not database
1 parent 12b1d35 commit 92f5a75

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src/main/java/org/mskcc/oncokb/curation/util/parser/ProteinChangeParser.java

Lines changed: 1 addition & 3 deletions
Original file line numberDiff line numberDiff line change
@@ -142,9 +142,7 @@ public static ParsingStatus<Alteration> parseInframe(String proteinChange) {
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// we only want to specify reference when it's one position ins/del
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alteration.setRefResidues(m.group(1).toUpperCase());
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}
145-
if (alteration.getRefResidues() != null) {
146-
revisedProteinChange += alteration.getRefResidues();
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}
145+
revisedProteinChange += m.group(1);
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alteration.setStart(Integer.valueOf(m.group(2)));
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revisedProteinChange += alteration.getStart();
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if (m.group(3) != null) {

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