adding to source control

Author: ropelews

bil_site/settings.py

@@ -28,7 +28,7 @@
     sys.exit(1)
 
 essential_site_cfg_keys = [
-    'SECRET_KEY', 'DEBUG', 'IMG_DATA_HOST',
+    'SECRET_KEY', 'DEBUG', 'IMG_DATA_HOST', 'DB_HOST',
     'FAKE_STORAGE_AREA', 'DATABASE', 'STAGING_AREA_ROOT'
 ]
 
@@ -137,7 +137,8 @@
             'NAME': config['Security']['DATABASE_NAME'],
             'USER': config['Security']['DATABASE_USER'],
             'PASSWORD': DATABASE_PASSWORD,
-            'HOST': 'localhost',
+            #'HOST': 'localhost',
+            'HOST': config['Security']['DB_HOST'],
             'PORT': '',
         }
     }
@@ -214,8 +215,8 @@
 #Email Settings
 EMAIL_HOST = 'smtp.gmail.com'
 EMAIL_PORT = '587'
-EMAIL_HOST_USER = 'CHANGE_ME'
-EMAIL_HOST_PASSWORD = 'CHANGE_ME'
+EMAIL_HOST_USER = config['Security']['EMAIL_USER']
+EMAIL_HOST_PASSWORD = config['Security']['EMAIL_PASSWORD']
 EMAIL_USE_TLS = True
 EMAIL_BACKEND = 'django.core.mail.backends.smtp.EmailBackend'
 #EMAIL_USE_SSL = False

ingest/admin.py

@@ -40,7 +40,7 @@ def export_as_json(modeladmin, request, queryset):
 class CollectionAdmin(admin.ModelAdmin):
     search_fields = ("bil_uuid__startswith", )
     list_display = ("bil_uuid","name","submission_status","validation_status", "view_descriptivemetadatas_link", "view_sheets_link","view_eventslogs_link")
-    list_filter = ('submission_status', 'validation_status', 'lab_name', 'project')
+    list_filter = ('submission_status', 'validation_status', 'lab_name', 'project', 'project_funder_id', 'user')
     actions = [mark_as_validated_and_submitted, export_as_json]
     ordering = ('bil_uuid',)
     def view_descriptivemetadatas_link(self, obj):
@@ -79,7 +79,8 @@ class Project(admin.ModelAdmin):
     list_display = ("id", "name", "funded_by", "is_biccn")
 @admin.register(DescriptiveMetadata)
 class DescriptiveMetadataAdmin(admin.ModelAdmin):
-    list_display = ("r24_directory", "sample_id","collection")
+    list_display = ("r24_directory", "investigator", "sample_id","collection")
+    list_filter = ('investigator', 'lab')
 @admin.register(Contributor)
 class Contributor(admin.ModelAdmin):
     list_display = ("id", "contributorname", "creator", "contributortype", "nametype", "nameidentifier", "nameidentifierscheme", "affiliation", "affiliationidentifier", "affiliationidentifierscheme", "sheet")
@@ -88,7 +89,7 @@ class Instrument(admin.ModelAdmin):
     list_display = ("id", "microscopetype", "microscopemanufacturerandmodel", "objectivename", "objectiveimmersion", "objectivena", "objectivemagnification", "detectortype", "detectormodel", "illuminationtypes", "illuminationwavelength", "detectionwavelength", "sampletemperature", "sheet")
 @admin.register(Dataset)
 class Dataset(admin.ModelAdmin):
-    list_display = ("id", "bildirectory", "socialmedia", "subject", "subjectscheme", "rights", "rightsuri", "rightsidentifier", "image", "generalmodality", "technique", "other", "methods", "technicalinfo", "sheet")
+    list_display = ("id", "bildirectory", "socialmedia", "subject", "subjectscheme", "rights", "rightsuri", "rightsidentifier", "dataset_image", "generalmodality", "technique", "other", "methods", "technicalinfo", "sheet")
 admin.site.register(Specimen)
 @admin.register(Image)
 class Image(admin.ModelAdmin):