@@ -786,7 +786,7 @@ def __get_ncbitaxonomy(df):
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Parameters:
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-----------
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df : pandas DataFrame
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- The input DataFrame containing a column named "ncbitaxonomy" with CNB taxonomy information.
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+ The input DataFrame containing a column named "ncbitaxonomy" with NCBI taxonomy information.
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Returns:
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--------
@@ -797,7 +797,7 @@ def __get_ncbitaxonomy(df):
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Note:
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-----
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The input DataFrame `df` should have a column named "ncbitaxonomy" containing categorical data
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- representing different NCBI taxonomies. The function counts the occurrences of each unique CNB taxonomy
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+ representing different NCBI taxonomies. The function counts the occurrences of each unique NCBI taxonomy
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and returns the result as a dictionary.
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"""
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return df ["ncbitaxonomy" ].value_counts ().to_dict ()
@@ -1285,7 +1285,7 @@ def report():
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It retrieves today's date, collects data information for today using the `today()` function,
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and computes various statistics related to the datasets. The statistics include the number
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of datasets, number of unique projects, completeness score, metadata versions count,
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- contributor count, affiliation count, award numbers count, species count, CNB taxonomy count,
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+ contributor count, affiliation count, award numbers count, species count, NCBI taxonomy count,
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sample local ID count, genotype count, general modality count, technique count, location count,
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and the percentage of datasets with metadata version 1. Additionally, it creates a treemap
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visualization for project counts.
@@ -1301,7 +1301,7 @@ def report():
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the required data using various helper functions and creates a dictionary containing the
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computed statistics. The report includes information on the number of datasets, number of unique
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projects, completeness score, metadata versions count, contributor count, affiliation count,
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- award numbers count, species count, CNB taxonomy count, sample local ID count, genotype count,
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+ award numbers count, species count, NCBI taxonomy count, sample local ID count, genotype count,
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general modality count, technique count, location count, and the percentage of datasets with
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metadata version 1. The treemap visualization for project counts is also generated as part of the
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report.
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