@@ -786,7 +786,7 @@ def __get_ncbitaxonomy(df):
786786 Parameters:
787787 -----------
788788 df : pandas DataFrame
789- The input DataFrame containing a column named "ncbitaxonomy" with CNB taxonomy information.
789+ The input DataFrame containing a column named "ncbitaxonomy" with NCBI taxonomy information.
790790
791791 Returns:
792792 --------
@@ -797,7 +797,7 @@ def __get_ncbitaxonomy(df):
797797 Note:
798798 -----
799799 The input DataFrame `df` should have a column named "ncbitaxonomy" containing categorical data
800- representing different NCBI taxonomies. The function counts the occurrences of each unique CNB taxonomy
800+ representing different NCBI taxonomies. The function counts the occurrences of each unique NCBI taxonomy
801801 and returns the result as a dictionary.
802802 """
803803 return df ["ncbitaxonomy" ].value_counts ().to_dict ()
@@ -1285,7 +1285,7 @@ def report():
12851285 It retrieves today's date, collects data information for today using the `today()` function,
12861286 and computes various statistics related to the datasets. The statistics include the number
12871287 of datasets, number of unique projects, completeness score, metadata versions count,
1288- contributor count, affiliation count, award numbers count, species count, CNB taxonomy count,
1288+ contributor count, affiliation count, award numbers count, species count, NCBI taxonomy count,
12891289 sample local ID count, genotype count, general modality count, technique count, location count,
12901290 and the percentage of datasets with metadata version 1. Additionally, it creates a treemap
12911291 visualization for project counts.
@@ -1301,7 +1301,7 @@ def report():
13011301 the required data using various helper functions and creates a dictionary containing the
13021302 computed statistics. The report includes information on the number of datasets, number of unique
13031303 projects, completeness score, metadata versions count, contributor count, affiliation count,
1304- award numbers count, species count, CNB taxonomy count, sample local ID count, genotype count,
1304+ award numbers count, species count, NCBI taxonomy count, sample local ID count, genotype count,
13051305 general modality count, technique count, location count, and the percentage of datasets with
13061306 metadata version 1. The treemap visualization for project counts is also generated as part of the
13071307 report.
0 commit comments