- Add new feature X

- Refactor code for better readability
- Fix bug in method Y
- Update dependencies to latest versions
- Remove unused imports

Author: icaoberg

braininventory/get.py

@@ -30,6 +30,14 @@ def __get_number_of_datasets(df):
 def __get_completeness_score(df):
       return df['score'].sum()/len(df)
 
+def __is_reachable(url):
+	response = requests.get(url)
+
+	if response.status_code == 200:
+		return True
+	else:
+		return False
+
 def __get_metadata_version(df):
     return df['metadata_version'] .value_counts().to_dict()
 
@@ -47,5 +55,6 @@ def report():
 	report['number_of_datasets'] = __get_number_of_datasets(df)
 	report['completeness_score'] = __get_completeness_score(df)
 	report['metadata_version'] = __get_metadata_version(df)
+	report['is_reachable'] = df['URL'].apply(__is_reachable)
 
 	return report

notebooks/Untitled.ipynb

@@ -0,0 +1,127 @@
+{
+ "cells": [
+  {
+   "cell_type": "code",
+   "execution_count": 9,
+   "id": "ec311d94-3350-4a60-9418-e934fb65487a",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "import braininventory"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 10,
+   "id": "cd60e1b5-e898-4c20-81fd-61bda774e59c",
+   "metadata": {},
+   "outputs": [
+    {
+     "data": {
+      "text/plain": [
+       "{'date': '2023-07-07',\n",
+       " 'number_of_datasets': 7198,\n",
+       " 'completeness_score': 0.997031232284329,\n",
+       " 'metadata_version': {1.0: 5755, 2.0: 1443}}"
+      ]
+     },
+     "execution_count": 10,
+     "metadata": {},
+     "output_type": "execute_result"
+    }
+   ],
+   "source": [
+    "data = braininventory.get.today()\n",
+    "report = braininventory.get.report()\n",
+    "report"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 11,
+   "id": "078104fd-1d0d-4fb9-b170-8fea75802669",
+   "metadata": {},
+   "outputs": [
+    {
+     "data": {
+      "text/plain": [
+       "Index(['score', 'metadata_version', 'dataset_uuid', 'bildirectory', 'exists',\n",
+       "       'project', 'is_biccn', 'bil_uuid', 'contributorname', 'affiliation',\n",
+       "       'award_number', 'species', 'ncbitaxonomy', 'samplelocalid', 'genotype',\n",
+       "       'generalmodality', 'technique', 'locations', 'URL', 'temp_file',\n",
+       "       'json_file', 'md5_coverage', 'sha256_coverage'],\n",
+       "      dtype='object')"
+      ]
+     },
+     "execution_count": 11,
+     "metadata": {},
+     "output_type": "execute_result"
+    }
+   ],
+   "source": [
+    "data.keys()"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 12,
+   "id": "e0b560fa-fdeb-44af-9653-ecd28f29cef1",
+   "metadata": {},
+   "outputs": [
+    {
+     "data": {
+      "text/plain": [
+       "0       https://download.brainimagelibrary.org/f1/60/f...\n",
+       "1       https://download.brainimagelibrary.org/90/a9/9...\n",
+       "2       https://download.brainimagelibrary.org/dd/90/d...\n",
+       "3       https://download.brainimagelibrary.org/9a/ae/9...\n",
+       "4       https://download.brainimagelibrary.org/9a/ae/9...\n",
+       "                              ...                        \n",
+       "7193    https://download.brainimagelibrary.org/84/d8/8...\n",
+       "7194    https://download.brainimagelibrary.org/77/72/7...\n",
+       "7195    https://download.brainimagelibrary.org/dd/c8/d...\n",
+       "7196    https://download.brainimagelibrary.org/6e/38/6...\n",
+       "7197    https://download.brainimagelibrary.org/01/fc/0...\n",
+       "Name: URL, Length: 7198, dtype: object"
+      ]
+     },
+     "execution_count": 12,
+     "metadata": {},
+     "output_type": "execute_result"
+    }
+   ],
+   "source": [
+    "data['URL']"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "596642ad-c204-41fd-b6c8-93e3dc53fd04",
+   "metadata": {},
+   "outputs": [],
+   "source": []
+  }
+ ],
+ "metadata": {
+  "kernelspec": {
+   "display_name": "Python 3",
+   "language": "python",
+   "name": "python3"
+  },
+  "language_info": {
+   "codemirror_mode": {
+    "name": "ipython",
+    "version": 3
+   },
+   "file_extension": ".py",
+   "mimetype": "text/x-python",
+   "name": "python",
+   "nbconvert_exporter": "python",
+   "pygments_lexer": "ipython3",
+   "version": "3.8.8"
+  }
+ },
+ "nbformat": 4,
+ "nbformat_minor": 5
+}