diff --git a/docs/source/documentation/brainglobe-atlasapi/index.md b/docs/source/documentation/brainglobe-atlasapi/index.md index c2ae8774..90e4f155 100644 --- a/docs/source/documentation/brainglobe-atlasapi/index.md +++ b/docs/source/documentation/brainglobe-atlasapi/index.md @@ -52,6 +52,7 @@ A number of atlases are in development, but those available currently are: | [Kocher Bumblebee Brain Atlas](https://doi.org/10.1016/j.cub.2022.04.066) | 2.542 x 1.2407 x 1.2407 micron | Adult Worker | Confocal | [![More info](https://img.shields.io/badge/More%20info-Click%20here-blue)](https://brainglobe.info/documentation/brainglobe-atlasapi/usage/atlas-details.html#kocher-bumblebee-brain-atlas) | | Drosophila wing disc instar3 atlas| 2 micron | 3rd Instar Larvae | Confocal | [![More info](https://img.shields.io/badge/More%20info-Click%20here-blue)](https://brainglobe.info/documentation/brainglobe-atlasapi/usage/atlas-details.html#Drosophila-wing-disc-instar3-atlas) | | [DeMBA Developmental Mouse Brain Atlas](https://doi.org/10.1038/s41467-025-63177-9) | 10, 20, and 25 micron | every day from P04 to P56 | MRI, STPT, LSFM | [![More info](https://img.shields.io/badge/More%20info-Click%20here-blue)](https://brainglobe.info/documentation/brainglobe-atlasapi/usage/atlas-details.html#demba-developmental-mouse-brain-atlas) | +| [Dorr MRI Mouse Atlas](https://doi.org/10.1016/j.neuroimage.2008.03.037) | 32 micron | 12 week old | MRI | [![More info](https://img.shields.io/badge/More%20info-Click%20here-blue)](https://brainglobe.info/documentation/brainglobe-atlasapi/usage/atlas-details.html#dorr-mri-mouse-atlas) | **Acronyms:** @@ -98,3 +99,11 @@ If you find the BrainGlobe Atlas API useful, please cite the paper in your work: >Claudi, F., Petrucco, L., Tyson, A. L., Branco, T., Margrie, T. W. and Portugues, R. (2020). BrainGlobe Atlas API: a common interface for neuroanatomical atlases. Journal of Open Source Software, 5(54), 2668, **Don't forget to cite the developers of the atlas that you used!** + + +## API Reference + +```{toctree} +:maxdepth: 1 +api +``` diff --git a/docs/source/documentation/brainglobe-atlasapi/usage/atlas-details.md b/docs/source/documentation/brainglobe-atlasapi/usage/atlas-details.md index 3914f83a..920c419d 100644 --- a/docs/source/documentation/brainglobe-atlasapi/usage/atlas-details.md +++ b/docs/source/documentation/brainglobe-atlasapi/usage/atlas-details.md @@ -393,7 +393,15 @@ Available versions: * at P56 * `demba_allen_seg_dev_mouse_p56_20um` * `demba_allen_seg_dev_mouse_p56_25um` +### [Dorr MRI Mouse Atlas](https://doi.org/10.1016/j.neuroimage.2008.03.037) +This atlas is a high-resolution, three-dimensional MRI-based atlas of the adult C57Bl/6J mouse brain, providing +comprehensive anatomical coverage of the cerebrum, cerebellum, and brainstem. The atlas was constructed from +within-skull, T2-weighted MR images acquired at 32 μm isotropic resolution from forty 12-week-old mice scanned on a 7 T +scanner. Following normalisation, registration, and averaging of individual scans, 62 distinct brain structures were +manually delineated. +Available versions: +* `dorr_mouse_mri_32um` ## Rat ### [Waxholm Space atlas of the Sprague Dawley rat brain](https://doi.org/10.1038/s41592-023-02034-3)