allow specifying a custom index (via hts-nim)

use /path/to/bam##idx##/other-path/to/bam.index

Author: brentp

CHANGES.md

@@ -1,3 +1,7 @@
+v0.3.3
+======
++ allow specifying a custom index by passing '/path/to/bam##idx##/other-path/to/index.bai'
+
 v0.3.1
 ======
 + fix bug with regions and d4 that would cause error even when --d4 was not used.

mosdepth.nim

@@ -775,7 +775,7 @@ when(isMainModule):
   when not defined(release) and not defined(lto):
     stderr.write_line "[mosdepth] WARNING: built in debug mode; will be slow"
 
-  let version = "mosdepth 0.3.2"
+  let version = "mosdepth 0.3.3"
   let env_fasta = getEnv("REF_PATH")
   var doc = format("""
   $version

mosdepth.nimble

@@ -1,13 +1,13 @@
 # Package
 
-version       = "0.3.2"
+version       = "0.3.3"
 author        = "Brent Pedersen"
 description   = "fast depth"
 license       = "MIT"
 
 # Dependencies
 
-requires "hts >= 0.3.1", "docopt >= 0.6.8", "nim >= 1.0.0", "https://github.com/brentp/d4-nim"
+requires "hts >= 0.3.21", "docopt >= 0.6.8", "nim >= 1.0.0", "https://github.com/brentp/d4-nim"
 
 bin = @["mosdepth"]
 skipDirs = @["tests"]