ancestry note

mike-w-wilson · mike-w-wilson · commit 19814b71daed · 2025-09-17T11:27:11.000-04:00
sklearn!

# Conflicts:
#	gnomad/sample_qc/ancestry.py
diff --git a/gnomad/sample_qc/ancestry.py b/gnomad/sample_qc/ancestry.py
@@ -173,7 +173,6 @@ def apply_sklearn_classification_model(
     logger.warning(
         "The use of .onnx files and apply_onnx_classification_model is recommended."
     )
-
     classification = fit.predict(data_pd)
     probs = fit.predict_proba(data_pd)
     probs = pd.DataFrame(probs, columns=[f"prob_{p}" for p in fit.classes_])

Original file line number	Diff line number	Diff line change
`@@ -173,7 +173,6 @@ def apply_sklearn_classification_model(`
`173`	`173`	`logger.warning(`
`174`	`174`	`"The use of .onnx files and apply_onnx_classification_model is recommended."`
`175`	`175`	`)`
`176`		`-`
`177`	`176`	`classification = fit.predict(data_pd)`
`178`	`177`	`probs = fit.predict_proba(data_pd)`
`179`	`178`	`probs = pd.DataFrame(probs, columns=[f"prob_{p}" for p in fit.classes_])`