diff --git a/gnomad/resources/grch38/reference_data.py b/gnomad/resources/grch38/reference_data.py index b34015e11..25040940f 100644 --- a/gnomad/resources/grch38/reference_data.py +++ b/gnomad/resources/grch38/reference_data.py @@ -426,8 +426,20 @@ def get_truth_ht() -> Table: ) gencode = VersionedTableResource( + # The default version is v39, which is the version of gencode used by VEP 105, which + # is the version used to annotate gnomAD v4. default_version="v39", versions={ + "v49": GnomadPublicTableResource( + path="gs://gnomad-public-requester-pays/resources/grch38/gencode/gencode.v49.annotation.ht", + import_func=import_gencode, + import_args={ + "gtf_path": "gs://gcp-public-data--gnomad/resources/grch38/gencode/gencode.v49.annotation.gtf.gz", + "reference_genome": "GRCh38", + "force": True, + "min_partitions": 100, + }, + ), "v39": GnomadPublicTableResource( path="gs://gnomad-public-requester-pays/resources/grch38/gencode/gencode.v39.annotation.ht", import_func=import_gencode,