Merge pull request #15 from c3g/fix_yield

fixing fastp fields for yield and sumBases

Author: MareikeJaniak

RunDashboard/functions.py

@@ -114,6 +114,8 @@ def descramble_avgYield(project_id, project_dict, data, numSamples, configSeq):
                 sumYield += yield1[sample].get("FastP_mqc-generalstats-fastp-yield")
             elif yield1[sample].get("FastP_mqc_generalstats_fastp_yield") != None:
                 sumYield += yield1[sample].get("FastP_mqc_generalstats_fastp_yield")
+            elif yield1[sample].get("FastP_mqc_generalstats_fastp_yield_1") != None:
+                sumYield += yield1[sample].get("FastP_mqc_generalstats_fastp_yield_1")
             else:
                 numSamples -= 1
         else:
@@ -180,6 +182,8 @@ def descramble_sumBases(project_id, project_dict, data, configSeq):
                 sumBases += base_data[sample].get("FastP_mqc-generalstats-fastp-yield")
             elif base_data[sample].get("FastP_mqc_generalstats_fastp_yield") != None:
                 sumBases += base_data[sample].get("FastP_mqc_generalstats_fastp_yield")
+            elif base_data[sample].get("FastP_mqc_generalstats_fastp_yield_1") != None:
+                sumBases += base_data[sample].get("FastP_mqc_generalstats_fastp_yield_1")
 
     return sumBases