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Added test for include sampleid flag
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src/test/java/org/cbioportal/infrastructure/repository/clickhouse/genomic_data/ClickhouseGenomicDataMapperTest.java

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@@ -155,27 +155,6 @@ public void getMutationCountsByTypeAddSampleId() {
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.isNotEmpty()
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);
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}
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@Test
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public void getMutationCountsByTypeNoSampleId() {
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StudyViewFilter studyViewFilter = new StudyViewFilter();
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studyViewFilter.setStudyIds(List.of(STUDY_TCGA_PUB));
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GenomicDataFilter genomicDataFilterMutation = new GenomicDataFilter("AKT1", "mutation");
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List<GenomicDataCountItem> mutationCountsByType =
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mapper.getMutationCountsByType(
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StudyViewFilterFactory.make(studyViewFilter, null, studyViewFilter.getStudyIds(), null),
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List.of(genomicDataFilterMutation), false);
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assertThat(mutationCountsByType)
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.flatExtracting(GenomicDataCountItem::getCounts)
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.extracting(GenomicDataCount::getSampleIds)
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.allSatisfy(sampleIds ->
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assertThat(sampleIds)
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.as("sampleIds should be null when includeSampleIds=false")
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.isNull()
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);
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}
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@Test
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public void getProteinExpressionCounts() {

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