Commit 86690e1
Gene Table v7:migrate outdated gene symbols in data files (#2252)
Co-authored-by: Ramya Madupuri <[email protected]>1 parent 568e797 commit 86690e1
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lines changed- crdc/gdc
- acc_tcga_gdc
- alal_target_gdc
- aml_target_gdc
- aml_tcga_gdc
- blca_tcga_gdc
- bll_target_gdc
- brain_cptac_gdc
- brca_tcga_gdc
- breast_cptac_gdc
- ccrcc_tcga_gdc
- cesc_tcga_gdc
- chol_tcga_gdc
- chrcc_tcga_gdc
- coad_cptac_gdc
- coad_tcga_gdc
- difg_tcga_gdc
- dlbclnos_tcga_gdc
- esca_tcga_gdc
- gbm_tcga_gdc
- hcc_tcga_gdc
- hgsoc_tcga_gdc
- hnsc_tcga_gdc
- luad_cptac_gdc
- luad_tcga_gdc
- lusc_cptac_gdc
- lusc_tcga_gdc
- mnet_tcga_gdc
- nbl_target_gdc
- nsgct_tcga_gdc
- ohnca_cptac_gdc
- os_target_gdc
- ovary_cptac_gdc
- paad_tcga_gdc
- pancreas_cptac_gdc
- plmeso_tcga_gdc
- prad_tcga_gdc
- prcc_tcga_gdc
- rcc_cptac_gdc
- read_tcga_gdc
- skcm_tcga_gdc
- soft_tissue_tcga_gdc
- stad_tcga_gdc
- thpa_tcga_gdc
- thym_tcga_gdc
- ucec_tcga_gdc
- ucs_tcga_gdc
- uec_cptac_gdc
- um_tcga_gdc
- wt_target_gdc
- public
- acbc_mskcc_2015
- acc_2019
- acc_tcga_pan_can_atlas_2018
- acc_tcga
- acyc_jhu_2016
- acyc_mda_2015
- acyc_mgh_2016
- acyc_mskcc_2013
- all_phase2_target_2018_pub
- all_stjude_2016
- aml_ohsu_2018
- aml_ohsu_2022
- aml_target_2018_pub
- ampca_bcm_2016
- angs_painter_2020
- angs_painter_2025
- angs_project_painter_2018
- asclc_msk_2024
- bcc_unige_2016
- blca_bgi
- blca_cornell_2016
- blca_dfarber_mskcc_2014
- blca_msk_2024
- blca_msk_tcga_2020
- blca_mskcc_solit_2012
- blca_pdx_msk_2025
- blca_tcga_pan_can_atlas_2018
- blca_tcga_pub_2017
- blca_tcga_pub
- blca_tcga
- bm_nsclc_mskcc_2023
- braf_msk_impact_2024
- brain_cptac_2020
- brca_bccrc_xenograft_2014
- brca_bccrc
- brca_broad
- brca_cptac_2020
- brca_dfci_2020
- brca_dldccc_2022
- brca_igr_2015
- brca_jup_msk_2020
- brca_mbcproject_2022
- brca_mbcproject_wagle_2017
- brca_metabric
- brca_pareja_msk_2020
- brca_sanger
- brca_smc_2018
- brca_tcga_pan_can_atlas_2018
- brca_tcga_pub2015
- brca_tcga_pub
- brca_tcga
- ccle_broad_2019
- ccle_broad_2025
- ccle_genentech_2014
- ccrcc_dfci_2019
- ccrcc_irc_2014
- ccrcc_utokyo_2013
- cellline_ccle_broad
- cellline_nci60
- cesc_tcga_pan_can_atlas_2018
- cesc_tcga
- chl_sccc_2023
- chol_jhu_2013
- chol_tcga_pan_can_atlas_2018
- chol_tcga
- cll_broad_2015
- cll_broad_2022
- cll_iuopa_2015
- cllsll_icgc_2011
- coad_caseccc_2015
- coad_cptac_2019
- coad_silu_2022
- coadread_cass_2020
- coadread_dfci_2016
- coadread_genentech
- coadread_tcga_pan_can_atlas_2018
- coadread_tcga_pub
- coadread_tcga
- crc_hta11_htan_2021
- crc_orion_2024
- crc_sysucc_2022
- cscc_hgsc_bcm_2014
- cscc_ranson_2022
- cscc_ucsf_2021
- ctcl_columbia_2015
- desm_broad_2015
- difg_glass_2019
- difg_glass
- dlbc_broad_2012
- dlbc_tcga_pan_can_atlas_2018
- dlbc_tcga
- dlbcl_dfci_2018
- egc_mskcc_2020
- egc_tmucih_2015
- egc_trap_ccr_msk_2023
- egc_trap_msk_2020
- es_dfarber_broad_2014
- es_iocurie_2014
- esca_broad
- esca_tcga_pan_can_atlas_2018
- esca_tcga
- escc_icgc
- escc_ucla_2014
- gbc_shanghai_2014
- gbm_columbia_2019
- gbm_cptac_2021
- gbm_mayo_pdx_sarkaria_2019
- gbm_tcga_pan_can_atlas_2018
- gbm_tcga_pub2013
- gbm_tcga_pub
- gbm_tcga
- glioma_mskcc_2019
- hcc_clca_2024
- hcc_inserm_fr_2015
- hcc_meric_2021
- hccihch_pku_2019
- hnsc_a5consortium_2025
- hnsc_broad
- hnsc_jhu
- hnsc_mdanderson_2013
- hnsc_tcga_pan_can_atlas_2018
- hnsc_tcga_pub
- hnsc_tcga
- ihch_smmu_2014
- kich_tcga_pan_can_atlas_2018
- kich_tcga_pub
- kich_tcga
- kirc_tcga_pan_can_atlas_2018
- kirc_tcga_pub
- kirc_tcga
- kirp_tcga_pan_can_atlas_2018
- kirp_tcga
- laml_tcga_pan_can_atlas_2018
- laml_tcga_pub
- laml_tcga
- lcll_broad_2013
- lgg_tcga_pan_can_atlas_2018
- lgg_tcga
- lgg_ucsf_2014
- lgggbm_tcga_pub
- liad_inserm_fr_2014
- lihc_amc_prv
- lihc_tcga_pan_can_atlas_2018
- lihc_tcga
- luad_broad
- luad_cas_2020
- luad_cptac_2020
- luad_mskcc_2015
- luad_mskcc_2023_met_organotropism
- luad_mskimpact_2021
- luad_oncosg_2020
- luad_tcga_pan_can_atlas_2018
- luad_tcga_pub
- luad_tcga
- lung_nci_2022
- lung_smc_2016
- lusc_cptac_2021
- lusc_tcga_pan_can_atlas_2018
- lusc_tcga_pub
- lusc_tcga
- mbl_broad_2012
- mbl_pcgp
- mbl_sickkids_2016
- mbn_mdacc_2013
- mbn_sfu_2023
- mcl_idibips_2013
- mds_mskcc_2020
- mel_dfci_2019
- mel_iatlas_riaz_nivolumab_2017
- mel_tsam_liang_2017
- mel_ucla_2016
- meso_tcga_pan_can_atlas_2018
- meso_tcga
- metastatic_solid_tumors_mich_2017
- mixed_allen_2018
- mixed_msk_tcga_2021
- mixed_pipseq_2017
- mm_broad
- mng_utoronto_2021
- mpcproject_broad_2021
- mpnst_mskcc
- mrt_bcgsc_2016
- msk_chord_2024
- msk_impact_2017
- msk_met_2021
- nbl_amc_2012
- nbl_broad_2013
- nbl_target_2018_pub
- nbl_ucologne_2015
- nccrcc_genentech_2014
- nepc_wcm_2016
- nhl_bcgsc_2013
- normal_skin_fibroblast_2024
- normal_skin_keratinocytes_2024
- normal_skin_melanocytes_2024
- npc_nusingapore
- nsclc_mskcc_2015
- nsclc_mskcc_2018
- nsclc_tcga_broad_2016
- nsclc_tracerx_2017
- nst_nfosi_ntap
- ov_tcga_pan_can_atlas_2018
- ov_tcga_pub
- ov_tcga
- paac_jhu_2014
- paad_cptac_2021
- paad_qcmg_uq_2016
- paad_tcga_pan_can_atlas_2018
- paad_tcga
- paad_utsw_2015
- pact_jhu_2011
- pan_origimed_2020
- pancan_mimsi_msk_2024
- pancan_pcawg_2020
- pancan_pdx_uthsa_2023
- panet_arcnet_2017
- panet_jhu_2011
- past_dkfz_heidelberg_2013
- pcnsl_mayo_2015
- pcpg_tcga_pan_can_atlas_2018
- pcpg_tcga_pub
- pcpg_tcga
- pdac_msk_2024
- pediatric_dkfz_2017
- pog570_bcgsc_2020
- pptc_2019
- prad_broad_2013
- prad_broad
- prad_cdk12_mskcc_2020
- prad_cpcg_2017
- prad_eururol_2017
- prad_fhcrc
- prad_mcspc_mskcc_2020
- prad_mich
- prad_msk_mdanderson_2023
- prad_msk_stopsack_2021
- prad_mskcc_2014
- prad_mskcc_cheny1_organoids_2014
- prad_mskcc
- prad_organoids_msk_2022
- prad_p1000
- prad_pik3r1_msk_2021
- prad_su2c_2015
- prad_su2c_2019
- prad_tcga_pan_can_atlas_2018
- prad_tcga_pub
- prad_tcga
- prostate_dkfz_2018
- prostate_pcbm_swiss_2019
- rectal_msk_2022
- rms_nih_2014
- rt_target_2018_pub
- sarc_tcga_pan_can_atlas_2018
- sarc_tcga_pub
- sarc_tcga
- sarcoma_ucla_2024
- schw_ctf_synodos_2025
- sclc_cancercell_gardner_2017
- sclc_clcgp
- sclc_jhu
- sclc_uc_2024
- sclc_ucologne_2015
- sft_sysucc_2023
- skcm_broad_brafresist_2012
- skcm_broad_dfarber
- skcm_broad
- skcm_dfci_2015
- skcm_mskcc_2014
- skcm_tcga_pan_can_atlas_2018
- skcm_tcga_pub_2015
- skcm_tcga
- skcm_yale
- stad_oncosg_2018
- stad_pfizer_uhongkong
- stad_tcga_pan_can_atlas_2018
- stad_tcga_pub
- stad_tcga
- stad_uhongkong
- stad_utokyo
- stes_tcga_pub
- stmyec_wcm_2022
- tet_nci_2014
- tgct_tcga_pan_can_atlas_2018
- tgct_tcga
- thca_tcga_pan_can_atlas_2018
- thca_tcga_pub
- thca_tcga
- thym_tcga_pan_can_atlas_2018
- thym_tcga
- thyroid_gatci_2024
- tmb_mskcc_2018
- uccc_nih_2017
- ucec_cptac_2020
- ucec_tcga_pan_can_atlas_2018
- ucec_tcga_pub
- ucec_tcga
- ucs_jhu_2014
- ucs_tcga_pan_can_atlas_2018
- ucs_tcga
- um_qimr_2016
- utuc_cornell_baylor_mdacc_2019
- utuc_igbmc_2021
- uvm_tcga_pan_can_atlas_2018
- uvm_tcga
- vsc_cuk_2018
- wt_target_2018_pub
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