Merge pull request #58 from calculquebec/bioc600

Fichier de configuration pour la grappe bioc600

Author: hgingras

bioc600/common.tf

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+../common/common.tf

bioc600/config.yaml

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+jupyterhub::jupyterhub_config_hash:
+  SbatchForm:
+    memory:
+      min: 1024
+      max: 50000
+      def: 2048
+
+profile::software_stack::lmod_default_modules:
+  - 'python/3.11'
+  - 'bwa/0.7.18'
+  - 'bedtools/2.31.0'
+  - 'bedops/2.4.41'
+  - 'samtools/1.22.1'
+  - 'sambamba/1.0.1'
+  - 'gcc/12.3'
+  - 'r/4.5.0'
+  - 'r-bundle-bioconductor/3.21'
+  - 'trimmomatic/0.39'
+  - 'perl/5.36.1'
+  - 'star/2.7.11b'
+  - 'subread/2.0.6'
+  - 'fastqc/0.12.1'
+
+jupyterhub::kernel::venv::packages:
+  - 'cutadapt'
+  - 'deeptools'

bioc600/main.tf

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+locals {
+  custom = {
+    nnodes = {
+      cpupool = 7
+    }
+    home_size = 100
+    project_size = 200
+    scratch_size = 1625
+
+    user_quotas = {
+      home = "7g"
+      project = "15g"
+      scratch = "125g"
+    }
+  }
+  name = "bioc600"
+}