update quarto template and gh actions

Author: tavareshugo

.github/workflows/deploy_latest.yml

@@ -0,0 +1,21 @@
+name: Deploy Latest
+
+on:
+  push:
+    branches:
+      - main
+  workflow_dispatch:
+
+jobs:
+  deploy:
+    runs-on: ubuntu-latest
+
+    steps:
+      - name: Deploy
+        uses: cambiotraining/crit-gh-actions/course-deploy@main
+        with:
+          pre_render: "echo 'Optional pre-render commands'"
+          post_render: "echo 'Optional post-render commands'"
+          enable_archive: "false"
+        env:
+          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}

.github/workflows/publish_site.yml

@@ -0,0 +1,30 @@
+name: Tag Release
+
+on:
+  push:
+    tags:
+      - '20[2-9][0-9].[0-1][0-9].[0-3][0-9]'
+
+jobs:
+  archive:
+    runs-on: ubuntu-latest
+    steps: 
+      - name: Archive
+        uses: cambiotraining/crit-gh-actions/course-archive@main
+        with:
+          pre_render: "echo 'Optional pre-render commands'"
+          post_render: "echo 'Optional post-render commands'"
+        env:
+          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+
+  deploy:
+    runs-on: ubuntu-latest
+    needs: archive
+    steps:
+      - name: Deploy
+        uses: cambiotraining/crit-gh-actions/course-deploy@main
+        with:
+          pre_render: "echo 'Optional pre-render commands'"
+          post_render: "echo 'Optional post-render commands'"
+        env:
+          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}

.github/workflows/tag_release.yml

@@ -0,0 +1,31 @@
+name: Scheduled Quarto Extensions Update
+
+on:
+  schedule:
+    - cron: '0 6 1 * *'   # 06:00 UTC on the 1st of each month
+  workflow_dispatch:
+
+permissions:
+  contents: write
+  pull-requests: write
+
+jobs:
+  update-extensions:
+    runs-on: ubuntu-latest
+    steps:
+      - name: Checkout repository
+        uses: actions/checkout@v4
+
+      - name: Update extensions
+        uses: cambiotraining/crit-gh-actions/course-extensions-update@main
+
+      - name: Create or update PR
+        uses: peter-evans/create-pull-request@v4
+        with:
+          token: ${{ secrets.GITHUB_TOKEN }}
+          commit-message: "chore: automated update to Quarto extensions"
+          branch: "auto/quarto-ext-update"
+          title: "chore: automated update to Quarto extensions"
+          body: |
+            Automated update of Quarto extensions to their latest versions.
+          labels: "chore,extensions-update"

.github/workflows/update_extensions.yml

@@ -24,3 +24,5 @@ _site
 
 # Mac
 .DS_Store
+
+**/*.quarto_ipynb

.gitignore

@@ -0,0 +1,9 @@
+title: Callout Exercise
+description: A shortcode and filter to create callout exercises with star ratings.
+author: Cambridge Research Informatics Training
+version: 1.0.0
+contributes:
+  shortcodes:
+    - star_levels.lua
+  filters:
+    - callout_exercise.lua

_extensions/cambiotraining/callout-exercise/_extension.yml

@@ -0,0 +1,7 @@
+title: Citation CFF Parser
+description: A shortcode to create author lists and citations from CFF files.
+author: Cambridge Research Informatics Training
+version: 1.0.0
+contributes:
+  shortcodes:
+    - citation_cff.lua