Merge tag 'v3.2.0' into dev

Faster input generation

Author: keiranmraine

CHANGES.md

@@ -1,5 +1,12 @@
 # CHANGES
 
+## 3.2.0
+
+* Tabix search for high depth/excluded regions now performed in memory using IntervalTrees
+  * Reduces runtime of input step by ~50%
+  * Improved disk access profile
+  * Zero impact on results
+
 ## 3.1.2
 
 * 3.0.5 introduced species parsing bug causing single word species names to be invalid.

perl/lib/Sanger/CGP/Pindel.pm

@@ -26,7 +26,7 @@ use strict;
 use Const::Fast qw(const);
 
 use base 'Exporter';
-our $VERSION = '3.1.2';
+our $VERSION = '3.2.0';
 our @EXPORT = qw($VERSION);
 
 1;