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lines changed Original file line number Diff line number Diff line change @@ -173,11 +173,12 @@ _adding_scbasecamp_genes() #to add when using scPRINT-2
173173```
174174
175175It will also download the default checkpoint of a pretrain scprint2 model from
176- [ our hugging face page] ( https://huggingface.co/jkobject/scPRINT-2/ ) . But you can
177- use other ones if you prefer:
176+ [ our hugging face page] ( https://huggingface.co/jkobject/scPRINT/ ) . But you can
177+ use other ones if you prefer.
178+ Both scPRINT and scPRINT-2 checkpoints are for now stored in the scPRINT hugging face page:
178179
179180``` bash
180- $ hf download jkobject/scPRINT v2-medium .ckpt --local-dir .
181+ $ hf download jkobject/scPRINT small-v2 .ckpt --local-dir .
181182```
182183
183184A notebook for setting-up scPRINT-2 and lamin is also available
@@ -499,7 +500,7 @@ But if you want to, you can also recreate the gene embedding file through
499500functions, and it should recreate the file itself.
500501
501502The file itself is also available on
502- [ hugging face] ( https://huggingface.co/jkobject/scPRINT-2 /tree/main )
503+ [ hugging face] ( https://huggingface.co/jkobject/scPRINT/tree/main )
503504
504505/!\ Please understand that what I mean by gene embedding is the immutable input
505506gene embeddings encoding the gene name. scPRINT-2 directly takes raw counts as
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