ndx-microscopy/pyproject.toml at main · catalystneuro/ndx-microscopy · GitHub

1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
[build-system]
requires = ["hatchling"]
build-backend = "hatchling.build"

[project]
name = "ndx-microscopy"
version = "0.3.0"
authors = [
    { name="Alessandra Trapani", email="alessandra.trapani@catalystneuro.com" },
    { name="Cody Baker", email="cody.baker@catalystneuro.com" },
]
description = "An NWB extension to demonstrate the TAB proposal for enhancements to optical physiology neurodata types."
readme = "README.md"
# requires-python = ">=3.8"
license = {text = "BSD-3"}
classifiers = [
    "Programming Language :: Python :: 3.11",
    # "Development Status :: 4 - Beta",
    "Intended Audience :: Developers",
    "Intended Audience :: Science/Research",
    "License :: OSI Approved :: BSD License",
]
keywords = [
    'NeurodataWithoutBorders',
    'NWB',
    'nwb-extension',
    'ndx-extension',
]
dependencies = [
    "pynwb>=2.8.0",
    "hdmf>=3.14.1",
    "ndx-ophys-devices==0.2.0"
]

[project.urls]
"Homepage" = "https://github.com/CatalystNeuro/ndx-microscopy"
"Documentation" = "https://ndx-microscopy.readthedocs.io/"
"Bug Tracker" = "https://github.com/CatalystNeuro/ndx-microscopy/issues"
"Discussions" = "https://github.com/CatalystNeuro/ndx-microscopy/discussions"
"Changelog" = "https://github.com/CatalystNeuro/ndx-microscopy/blob/main/CHANGELOG.md"

# Include only the source code under `src/pynwb/ndx_microscopy` and the spec files under `spec`
# in the wheel.
[tool.hatch.build.targets.wheel]
packages = [
    "src/pynwb/ndx_microscopy",
    "spec"
]

# Rewrite the path to the `spec` directory to `ndx_microscopy/spec`.
# `ndx_microscopy/__init__.py` will look there first for the spec files.
# The resulting directory structure within the wheel will be:
# ndx_microscopy/
# ├── __init__.py
# ├── spec
# └── widgets
[tool.hatch.build.targets.wheel.sources]
"spec" = "ndx_microscopy/spec"

# The source distribution includes everything in the package except for the `src/matnwb` directory and
# git and github-related files.
[tool.hatch.build.targets.sdist]
exclude = [
    ".git*",
    "src/matnwb",
]

[tool.pytest.ini_options]
# uncomment below to run pytest always with code coverage reporting. NOTE: breakpoints may not work
# addopts = "--cov --cov-report html"

[tool.codespell]
skip = "htmlcov,.git,.mypy_cache,.pytest_cache,.coverage,*.pdf,*.svg,venvs,.tox,hdmf-common-schema,./docs/_build/*,*.ipynb"

[tool.coverage.run]
branch = true
source = ["ndx_microscopy"]

[tool.coverage.report]
exclude_lines = [
    "pragma: no cover",
    "@abstract"
]

[tool.black]
line-length = 120
preview = true
exclude = ".git|.mypy_cache|.tox|.venv|venv|.ipynb_checkpoints|_build/|dist/|__pypackages__|.ipynb|docs/"

[tool.ruff]
lint.select = ["E", "F", "T100", "T201", "T203"]
exclude = [
  ".git",
  ".tox",
  "__pycache__",
  "build/",
  "dist/",
  "docs/source/conf.py",
]
line-length = 120

[tool.ruff.lint.per-file-ignores]
"src/pynwb/ndx_microscopy/__init__.py" = ["E402", "F401"]
"src/spec/create_extension_spec.py" = ["T201"]

[tool.ruff.lint.mccabe]
max-complexity = 17