Add support for legacy v0.1.0 h5ad files; implement tests for legacy … #27
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| name: Tests | |
| on: | |
| push: | |
| branches: [main, dev] | |
| pull_request: | |
| branches: [main, dev] | |
| concurrency: | |
| group: tests-${{ github.workflow }}-${{ github.ref }} | |
| cancel-in-progress: true | |
| jobs: | |
| test: | |
| runs-on: ubuntu-latest | |
| timeout-minutes: 20 | |
| permissions: | |
| contents: read | |
| checks: write # needed for EnricoMi/publish-unit-test-result-action on PRs | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| python-version: ["3.12"] # add "3.13" if you want | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| # Prefer an action over curl|sh | |
| - name: Set up uv | |
| uses: astral-sh/setup-uv@v3 | |
| with: | |
| enable-cache: true | |
| - name: Install dependencies (frozen) | |
| run: uv sync --extra dev --frozen | |
| - name: Run tests with coverage | |
| run: | | |
| uv run pytest -v \ | |
| --cov=h5ad \ | |
| --cov-report=term-missing \ | |
| --cov-report=xml \ | |
| --cov-report=html \ | |
| --junitxml=pytest-results.xml | |
| - name: Publish test results summary | |
| uses: EnricoMi/publish-unit-test-result-action@v2 | |
| if: always() | |
| with: | |
| files: pytest-results.xml | |
| check_name: Test Results | |
| - name: Upload coverage artifacts | |
| uses: actions/upload-artifact@v4 | |
| if: always() | |
| with: | |
| name: coverage | |
| path: | | |
| coverage.xml | |
| htmlcov/ | |
| pytest-results.xml | |
| retention-days: 30 | |
| - name: Upload coverage to Codecov | |
| uses: codecov/codecov-action@v4 | |
| if: always() | |
| with: | |
| files: coverage.xml | |
| fail_ci_if_error: false |