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## Documentation
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### Notebooks
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- [Getting started](./vignettes/Get_Started.ipynb)
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- [Use filter-2](./vignettes/redeem_filter2.ipynb)
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- [WIKI: redeem filtering principles and strategies](https://github.com/chenweng1991/redeemR/wiki/ReDeeM-filtering-strategies)
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- [ReDeeM paper analysis reproducibility](https://github.com/chenweng1991/redeem_reproducibility)
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- [Extended ReDeeM robustness analysis](https://github.com/chenweng1991/redeem_robustness_reproducibility)
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### WiKi
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- [redeem filtering principles and strategies](https://github.com/chenweng1991/redeemR/wiki/ReDeeM-filtering-strategies)
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## Citation
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Please check out our study of human hematopoiesis using ReDeeM [Deciphering cell states and genealogies of human hematopoiesis](https://doi.org/10.1038/s41586-024-07066-z)

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