Work with upstream to update to work with new SciPy Versions

[mikemhenry]

Hitting this issue in CI:

FAILED openmmtools/tests/test_testsystems.py::test_properties_all_testsystems - TypeError: Could not parse Amber ASCII restart file /home/runner/micromamba/envs/openmmtools-test/lib/python3.10/site-packages/openmmtools/data/dhfr/JAC.inpcrd

But the actual issue is from openmm:

    def __init__(self, filename, asNumpy=False):
        try:
>           from scipy.io import NetCDFFile
E           ImportError: cannot import name 'NetCDFFile' from 'scipy.io' (/home/runner/micromamba/envs/openmmtools-test/lib/python3.10/site-packages/scipy/io/__init__.py)

../../../micromamba/envs/openmmtools-test/lib/python3.10/site-packages/openmm/app/internal/amber_file_parser.py:1440: ImportError

It has been fixed:
openmm/openmm#4601

But the conda-forge recipe needs to be updated

[ijpulidos]

Thanks for the issue. Tbh, I don't like the way this was solved in openmm, since netcdf_file is a class and it doesn't seem to be "pythonic" to use it that way. That said, are there any guidelines from the scipy team on this that we know of?

[ijpulidos]

Oh, but I see it's on the openmm side to be fixed, we are not using it directly here in openmmtools. Got it!