pom.xml

<?xml version="1.0" encoding="UTF-8"?>
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              National Center for Biotechnology Information

 This software/database is a "United States Government Work" under the
 terms of the United States Copyright Act.  It was written as part of
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Author:  Christiam Camacho

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<project xmlns="http://maven.apache.org/POM/4.0.0"
    xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
    xsi:schemaLocation="http://maven.apache.org/POM/4.0.0
                        http://maven.apache.org/maven-v4_0_0.xsd">

  <modelVersion>4.0.0</modelVersion>

  <groupId>gov.nih.nlm.ncbi</groupId>
  <artifactId>residue-count</artifactId>
  <version>1.0</version>
  <packaging>jar</packaging>

  <name>residue-count</name>
  <url>http://maven.apache.org</url>

  <properties>
    <project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
    <java.version>1.8</java.version>
    <spark.version>[2.3.3,)</spark.version>
    <spark.artifact.version>2.11</spark.artifact.version>
    <junit.version>4.13.2</junit.version>
    <maven.compiler.source>${java.version}</maven.compiler.source>
    <maven.compiler.target>${java.version}</maven.compiler.target>
    <app.main.class>gov.nih.nlm.ncbi.app.ResidueCount</app.main.class>
  </properties>

  <dependencies>
    <dependency>
      <groupId>org.apache.spark</groupId>
      <artifactId>spark-core_${spark.artifact.version}</artifactId>
      <version>${spark.version}</version>
      <exclusions>
        <exclusion>
          <groupId>org.xerial.snappy</groupId>
          <artifactId>snappy-java</artifactId>
        </exclusion>
      </exclusions>
    </dependency>
    <dependency>
      <groupId>org.apache.spark</groupId>
      <artifactId>spark-sql_${spark.artifact.version}</artifactId>
      <version>${spark.version}</version>
    </dependency>
    <dependency>
      <groupId>junit</groupId>
      <artifactId>junit</artifactId>
      <version>${junit.version}</version>
      <scope>test</scope>
    </dependency>
    <dependency>
        <groupId>org.scala-lang</groupId>
        <artifactId>scala-library</artifactId>
        <version>2.12.0-M1</version>
    </dependency>
    <dependency>
      <groupId>org.hamcrest</groupId>
      <artifactId>hamcrest-all</artifactId>
      <version>1.3</version>
      <scope>test</scope>
    </dependency>
    <dependency>
      <groupId>org.xerial.snappy</groupId>
      <artifactId>snappy-java</artifactId>
      <version>1.1.10.4</version>
      <type>jar</type>
      <scope>compile</scope>
    </dependency>
    <dependency>
      <groupId>com.google.cloud</groupId>
       <artifactId>google-cloud-storage</artifactId>
       <version>1.65.0</version>
    </dependency>   
    <dependency>
      <groupId>com.google.apis</groupId>
      <artifactId>google-api-services-storage</artifactId>
      <version>v1-rev129-1.22.0</version>
    </dependency>
    <dependency>
      <groupId>com.google.api-client</groupId>
      <artifactId>google-api-client</artifactId>
      <version>1.22.0</version>
    </dependency>
    <dependency>
      <groupId>com.google.http-client</groupId>
      <artifactId>google-http-client-jackson2</artifactId>
      <version>1.22.0</version>
    </dependency>
    <dependency>
      <groupId>com.google.http-client</groupId>
      <artifactId>google-http-client</artifactId>
      <version>1.22.0</version>
    </dependency>
    <dependency>
      <groupId>com.googlecode.json-simple</groupId>
      <artifactId>json-simple</artifactId>
      <version>1.1.1</version>
    </dependency>
  </dependencies>

  <build>
    <plugins>
      <plugin>
          <groupId>org.apache.maven.plugins</groupId>
          <artifactId>maven-jar-plugin</artifactId>
          <version>2.5</version>
          <configuration>
              <archive>
                <manifest>
                  <mainClass>${app.main.class}</mainClass>
                  <addClasspath>true</addClasspath>
                </manifest>
              </archive>
          </configuration>
      </plugin>
      <plugin>
        <artifactId>maven-assembly-plugin</artifactId>
        <version>3.1.1</version>
        <configuration>
          <descriptorRefs>
            <descriptorRef>jar-with-dependencies</descriptorRef>
          </descriptorRefs>
        </configuration>
        <executions>
          <execution>
            <id>make-assembly</id>
            <phase>package</phase>
            <goals>
              <goal>single</goal>
            </goals>
          </execution>
        </executions>
      </plugin>
      <plugin>
          <groupId>org.apache.maven.plugins</groupId>
          <artifactId>maven-javadoc-plugin</artifactId>
          <version>2.10.1</version>
      </plugin>
    </plugins>
  </build>

  <prerequisites>
    <maven>2.2.1</maven>
  </prerequisites>

</project>