From f4e25016bc5e4200ea28d3fb72de31bb326ab748 Mon Sep 17 00:00:00 2001
From: Igor Rodionov <goruha@gmail.com>
Date: Thu, 21 Aug 2025 16:34:59 +0200
Subject: [PATCH 01/23] Readme command usage

---
 action.yml | 22 +++++++++++-----------
 1 file changed, 11 insertions(+), 11 deletions(-)

diff --git a/action.yml b/action.yml
index 8754a97..406e855 100644
--- a/action.yml
+++ b/action.yml
@@ -232,15 +232,17 @@ runs:
       env:
         GITHUB_TOKEN: "${{ inputs.token }}"
       run: |
-        output_file=$(atmos docs generate ${{ inputs.target }} 2>&1 | sed -n -e  "s/^.*output=//p")
-        # Get relative path from absolute
-        output_file=$(realpath -s --relative-to="$PWD" "$output_file")
-        # Ignore changes if they are only whitespace
-        if ! git diff --quiet ${output_file} && git diff --ignore-all-space --ignore-blank-lines --quiet ${output_file}; then
-          git restore ${output_file}
-          echo Ignoring whitespace-only changes in generated file
-        fi
-        echo "file=${output_file}" >> $GITHUB_OUTPUT
+        atmos ${{ inputs.target }}
+        # Get all changed files and process them
+        changed_files=$(git status --porcelain | grep "^ M" | cut -c4-)
+        for file in $changed_files; do
+          # Ignore changes if they are only whitespace
+          if ! git diff --quiet "$file" && git diff --ignore-all-space --ignore-blank-lines --quiet "$file"; then
+            git restore "$file"
+            echo "Ignoring whitespace-only changes in generated file: $file"
+          fi
+        done
+        echo "file=$(echo $changed_files | tr '\n' ' ')" >> $GITHUB_OUTPUT
 
     - uses: gaurav-nelson/github-action-markdown-link-check@v1
       if: inputs.readme_enabled == 'true' && inputs.validate_readme == 'true'
@@ -302,8 +304,6 @@ runs:
         add-paths: |
           ${{ steps.banner.outputs.file }}
           ${{ steps.readme.outputs.file }}
-          **/README.md
-          docs/*
         body: |-
           ## what
           This is an auto-generated PR that updates the README.md and docs

From 86b6e173d0c8ded97575bf604953c7b23c010cbe Mon Sep 17 00:00:00 2001
From: Igor Rodionov <goruha@gmail.com>
Date: Thu, 21 Aug 2025 18:03:13 +0200
Subject: [PATCH 02/23] fix readme action

---
 action.yml | 8 ++++----
 1 file changed, 4 insertions(+), 4 deletions(-)

diff --git a/action.yml b/action.yml
index 406e855..30a95e8 100644
--- a/action.yml
+++ b/action.yml
@@ -38,10 +38,10 @@ inputs:
     required: false
     default: 'true'
 
-  target:
-    description: "Configuration name"
+  command:
+    description: "Atmos command to generate readme"
     required: true
-    default: 'readme'
+    default: 'docs generate readme'
 
   validate_readme:
     required: false
@@ -232,7 +232,7 @@ runs:
       env:
         GITHUB_TOKEN: "${{ inputs.token }}"
       run: |
-        atmos ${{ inputs.target }}
+        atmos ${{ inputs.command }}
         # Get all changed files and process them
         changed_files=$(git status --porcelain | grep "^ M" | cut -c4-)
         for file in $changed_files; do

From c0eff7fd085b607f5dfedb63093441f08a2020d8 Mon Sep 17 00:00:00 2001
From: Igor Rodionov <goruha@gmail.com>
Date: Thu, 21 Aug 2025 19:13:42 +0300
Subject: [PATCH 03/23] Update action.yml

---
 action.yml | 1 +
 1 file changed, 1 insertion(+)

diff --git a/action.yml b/action.yml
index 30a95e8..f6bf0fd 100644
--- a/action.yml
+++ b/action.yml
@@ -234,6 +234,7 @@ runs:
       run: |
         atmos ${{ inputs.command }}
         # Get all changed files and process them
+        git status --porcelain
         changed_files=$(git status --porcelain | grep "^ M" | cut -c4-)
         for file in $changed_files; do
           # Ignore changes if they are only whitespace

From e0220bfc1eca78ed6278eea64b9d507a4a4ca67d Mon Sep 17 00:00:00 2001
From: Igor Rodionov <goruha@gmail.com>
Date: Thu, 21 Aug 2025 18:30:23 +0200
Subject: [PATCH 04/23] Fix action.yml

---
 action.yml | 2 ++
 1 file changed, 2 insertions(+)

diff --git a/action.yml b/action.yml
index 30a95e8..3e65cf0 100644
--- a/action.yml
+++ b/action.yml
@@ -232,9 +232,11 @@ runs:
       env:
         GITHUB_TOKEN: "${{ inputs.token }}"
       run: |
+        set -e
         atmos ${{ inputs.command }}
         # Get all changed files and process them
         changed_files=$(git status --porcelain | grep "^ M" | cut -c4-)
+        set +e
         for file in $changed_files; do
           # Ignore changes if they are only whitespace
           if ! git diff --quiet "$file" && git diff --ignore-all-space --ignore-blank-lines --quiet "$file"; then

From aea4b75e3309aa592d71469acffb78a5a2ee352a Mon Sep 17 00:00:00 2001
From: Igor Rodionov <goruha@gmail.com>
Date: Thu, 21 Aug 2025 22:11:32 +0300
Subject: [PATCH 05/23] Update action.yml

---
 action.yml | 6 +++++-
 1 file changed, 5 insertions(+), 1 deletion(-)

diff --git a/action.yml b/action.yml
index 34fe30a..136132e 100644
--- a/action.yml
+++ b/action.yml
@@ -235,16 +235,20 @@ runs:
         set -e
         atmos ${{ inputs.command }}
         # Get all changed files and process them
-        git status --porcelain
+        echo "1"
         changed_files=$(git status --porcelain | grep "^ M" | cut -c4-)
+        echo "2"
         set +e
         for file in $changed_files; do
+          echo "3"
           # Ignore changes if they are only whitespace
           if ! git diff --quiet "$file" && git diff --ignore-all-space --ignore-blank-lines --quiet "$file"; then
+            echo "4"
             git restore "$file"
             echo "Ignoring whitespace-only changes in generated file: $file"
           fi
         done
+        echo "5"
         echo "file=$(echo $changed_files | tr '\n' ' ')" >> $GITHUB_OUTPUT
 
     - uses: gaurav-nelson/github-action-markdown-link-check@v1

From 9ee474469f5bee1ed8d327bc9d038953bb85dac8 Mon Sep 17 00:00:00 2001
From: Igor Rodionov <goruha@gmail.com>
Date: Thu, 21 Aug 2025 22:15:45 +0300
Subject: [PATCH 06/23] Update action.yml

---
 action.yml | 6 ++++++
 1 file changed, 6 insertions(+)

diff --git a/action.yml b/action.yml
index 136132e..2748aa2 100644
--- a/action.yml
+++ b/action.yml
@@ -236,6 +236,12 @@ runs:
         atmos ${{ inputs.command }}
         # Get all changed files and process them
         echo "1"
+        git status --porcelain
+        echo "1 - 1"
+        git status --porcelain | grep "^ M"
+        echo "1 - 2"
+        git status --porcelain | grep "^ M" | cut -c4-
+        echo "1 - 3"
         changed_files=$(git status --porcelain | grep "^ M" | cut -c4-)
         echo "2"
         set +e

From e29936b76462c40361ad811f630b4898b73bca7f Mon Sep 17 00:00:00 2001
From: Igor Rodionov <goruha@gmail.com>
Date: Thu, 21 Aug 2025 22:39:20 +0300
Subject: [PATCH 07/23] Update action.yml

---
 action.yml | 3 ++-
 1 file changed, 2 insertions(+), 1 deletion(-)

diff --git a/action.yml b/action.yml
index 2748aa2..3315e45 100644
--- a/action.yml
+++ b/action.yml
@@ -232,7 +232,7 @@ runs:
       env:
         GITHUB_TOKEN: "${{ inputs.token }}"
       run: |
-        set -e
+        set -o pipefail
         atmos ${{ inputs.command }}
         # Get all changed files and process them
         echo "1"
@@ -243,6 +243,7 @@ runs:
         git status --porcelain | grep "^ M" | cut -c4-
         echo "1 - 3"
         changed_files=$(git status --porcelain | grep "^ M" | cut -c4-)
+        set +o pipefail
         echo "2"
         set +e
         for file in $changed_files; do

From 93da31277d2766b68f266f50631b39dabe28ff01 Mon Sep 17 00:00:00 2001
From: Igor Rodionov <goruha@gmail.com>
Date: Thu, 21 Aug 2025 22:42:26 +0300
Subject: [PATCH 08/23] Update action.yml

---
 action.yml | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/action.yml b/action.yml
index 3315e45..8900218 100644
--- a/action.yml
+++ b/action.yml
@@ -232,7 +232,7 @@ runs:
       env:
         GITHUB_TOKEN: "${{ inputs.token }}"
       run: |
-        set -o pipefail
+        set +o pipefail
         atmos ${{ inputs.command }}
         # Get all changed files and process them
         echo "1"
@@ -243,7 +243,7 @@ runs:
         git status --porcelain | grep "^ M" | cut -c4-
         echo "1 - 3"
         changed_files=$(git status --porcelain | grep "^ M" | cut -c4-)
-        set +o pipefail
+        set -o pipefail
         echo "2"
         set +e
         for file in $changed_files; do

From 566f1ba64b079b50984500e2d86c1778c4a30be1 Mon Sep 17 00:00:00 2001
From: Igor Rodionov <goruha@gmail.com>
Date: Thu, 21 Aug 2025 22:44:35 +0300
Subject: [PATCH 09/23] Update action.yml

---
 action.yml | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/action.yml b/action.yml
index 8900218..8ae3173 100644
--- a/action.yml
+++ b/action.yml
@@ -232,7 +232,7 @@ runs:
       env:
         GITHUB_TOKEN: "${{ inputs.token }}"
       run: |
-        set +o pipefail
+        set +e
         atmos ${{ inputs.command }}
         # Get all changed files and process them
         echo "1"
@@ -243,7 +243,7 @@ runs:
         git status --porcelain | grep "^ M" | cut -c4-
         echo "1 - 3"
         changed_files=$(git status --porcelain | grep "^ M" | cut -c4-)
-        set -o pipefail
+        set -e
         echo "2"
         set +e
         for file in $changed_files; do

From 6f4589bdc59d690775936b33f6df1d92fc43a7d2 Mon Sep 17 00:00:00 2001
From: Igor Rodionov <goruha@gmail.com>
Date: Sat, 23 Aug 2025 00:27:28 +0300
Subject: [PATCH 10/23] Update action.yml

---
 action.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/action.yml b/action.yml
index 8ae3173..86a12c5 100644
--- a/action.yml
+++ b/action.yml
@@ -256,7 +256,7 @@ runs:
           fi
         done
         echo "5"
-        echo "file=$(echo $changed_files | tr '\n' ' ')" >> $GITHUB_OUTPUT
+        echo "file=$(echo $changed_files | tr '\n' ',')" >> $GITHUB_OUTPUT
 
     - uses: gaurav-nelson/github-action-markdown-link-check@v1
       if: inputs.readme_enabled == 'true' && inputs.validate_readme == 'true'

From 186602098ba59b7e98529b3bd452327c1cd640cf Mon Sep 17 00:00:00 2001
From: Igor Rodionov <goruha@gmail.com>
Date: Sat, 23 Aug 2025 00:31:13 +0300
Subject: [PATCH 11/23] Update action.yml

---
 action.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/action.yml b/action.yml
index 86a12c5..c62b47e 100644
--- a/action.yml
+++ b/action.yml
@@ -256,7 +256,7 @@ runs:
           fi
         done
         echo "5"
-        echo "file=$(echo $changed_files | tr '\n' ',')" >> $GITHUB_OUTPUT
+        echo "file=$(echo $changed_files | tr ' ',')" >> $GITHUB_OUTPUT
 
     - uses: gaurav-nelson/github-action-markdown-link-check@v1
       if: inputs.readme_enabled == 'true' && inputs.validate_readme == 'true'

From 26e6b1217e55c050b239da29d4499aa77b7ee825 Mon Sep 17 00:00:00 2001
From: Igor Rodionov <goruha@gmail.com>
Date: Sat, 23 Aug 2025 00:34:37 +0300
Subject: [PATCH 12/23] Update action.yml

---
 action.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/action.yml b/action.yml
index c62b47e..645b4ba 100644
--- a/action.yml
+++ b/action.yml
@@ -256,7 +256,7 @@ runs:
           fi
         done
         echo "5"
-        echo "file=$(echo $changed_files | tr ' ',')" >> $GITHUB_OUTPUT
+        echo "file=${changed_files// /,}" >> $GITHUB_OUTPUT
 
     - uses: gaurav-nelson/github-action-markdown-link-check@v1
       if: inputs.readme_enabled == 'true' && inputs.validate_readme == 'true'

From 81755d75d1e4cabd7afa068418d839bdd5bbf58c Mon Sep 17 00:00:00 2001
From: Igor Rodionov <goruha@gmail.com>
Date: Sat, 23 Aug 2025 01:46:13 +0300
Subject: [PATCH 13/23] Update action.yml

---
 action.yml | 11 +++++++----
 1 file changed, 7 insertions(+), 4 deletions(-)

diff --git a/action.yml b/action.yml
index 645b4ba..e02a737 100644
--- a/action.yml
+++ b/action.yml
@@ -256,7 +256,11 @@ runs:
           fi
         done
         echo "5"
-        echo "file=${changed_files// /,}" >> $GITHUB_OUTPUT
+        OLDIFS="$IFS"
+        IFS=","
+        files="${changed_files[*]}"
+        IFS="$OLDIFS"        
+        echo "file=${files}" >> $GITHUB_OUTPUT
 
     - uses: gaurav-nelson/github-action-markdown-link-check@v1
       if: inputs.readme_enabled == 'true' && inputs.validate_readme == 'true'
@@ -276,7 +280,7 @@ runs:
         commit_user_name: "${{ inputs.commit_user_name }}"
         commit_user_email: "${{ inputs.commit_user_email }}"
         commit_author: "${{ inputs.commit_author }}"
-        file_pattern: '${{ steps.banner.outputs.file }} ${{ steps.readme.outputs.file }}'
+        file_pattern: '${{ steps.banner.outputs.file }},${{ steps.readme.outputs.file }}'
         push_options: '${{ inputs.commit_push_options }}'
  
     - uses: actions/github-script@v7
@@ -316,8 +320,7 @@ runs:
         committer: ${{ inputs.commit_author }}
         sign-commits: ${{ inputs.sign-commits }}
         add-paths: |
-          ${{ steps.banner.outputs.file }}
-          ${{ steps.readme.outputs.file }}
+          ${{ steps.banner.outputs.file }},${{ steps.readme.outputs.file }}
         body: |-
           ## what
           This is an auto-generated PR that updates the README.md and docs

From 03300333930ec07d4f0aa8b128df5ffe95b21baf Mon Sep 17 00:00:00 2001
From: Igor Rodionov <goruha@gmail.com>
Date: Sat, 23 Aug 2025 01:49:39 +0300
Subject: [PATCH 14/23] Update action.yml

---
 action.yml | 1 +
 1 file changed, 1 insertion(+)

diff --git a/action.yml b/action.yml
index e02a737..b793977 100644
--- a/action.yml
+++ b/action.yml
@@ -260,6 +260,7 @@ runs:
         IFS=","
         files="${changed_files[*]}"
         IFS="$OLDIFS"        
+        echo "6"
         echo "file=${files}" >> $GITHUB_OUTPUT
 
     - uses: gaurav-nelson/github-action-markdown-link-check@v1

From 91c658ada2806ce385047da39caf40921fc08bb5 Mon Sep 17 00:00:00 2001
From: Igor Rodionov <goruha@gmail.com>
Date: Sat, 23 Aug 2025 01:53:51 +0300
Subject: [PATCH 15/23] Add echo statement for changed files in action.yml

---
 action.yml | 1 +
 1 file changed, 1 insertion(+)

diff --git a/action.yml b/action.yml
index b793977..e5e27aa 100644
--- a/action.yml
+++ b/action.yml
@@ -261,6 +261,7 @@ runs:
         files="${changed_files[*]}"
         IFS="$OLDIFS"        
         echo "6"
+        echo "${files}"
         echo "file=${files}" >> $GITHUB_OUTPUT
 
     - uses: gaurav-nelson/github-action-markdown-link-check@v1

From 03a5e182424128a3dfb38300de09ca55c7d698b7 Mon Sep 17 00:00:00 2001
From: Igor Rodionov <goruha@gmail.com>
Date: Sat, 23 Aug 2025 01:58:25 +0300
Subject: [PATCH 16/23] Update action.yml

---
 action.yml | 5 +----
 1 file changed, 1 insertion(+), 4 deletions(-)

diff --git a/action.yml b/action.yml
index e5e27aa..53c50b3 100644
--- a/action.yml
+++ b/action.yml
@@ -256,10 +256,7 @@ runs:
           fi
         done
         echo "5"
-        OLDIFS="$IFS"
-        IFS=","
-        files="${changed_files[*]}"
-        IFS="$OLDIFS"        
+        files="${changed_files}"
         echo "6"
         echo "${files}"
         echo "file=${files}" >> $GITHUB_OUTPUT

From 77955a01c1b98cbe845bc7562b64d1aec44c0aa3 Mon Sep 17 00:00:00 2001
From: Igor Rodionov <goruha@gmail.com>
Date: Sat, 23 Aug 2025 02:01:15 +0300
Subject: [PATCH 17/23] Fix file variable assignment in action.yml

---
 action.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/action.yml b/action.yml
index 53c50b3..0d3710b 100644
--- a/action.yml
+++ b/action.yml
@@ -256,7 +256,7 @@ runs:
           fi
         done
         echo "5"
-        files="${changed_files}"
+        files="$(changed_files | tr '\n' ',')"
         echo "6"
         echo "${files}"
         echo "file=${files}" >> $GITHUB_OUTPUT

From 94c9bcb413367494a13a9c9ba6a9c0303f25a7ab Mon Sep 17 00:00:00 2001
From: Igor Rodionov <goruha@gmail.com>
Date: Sat, 23 Aug 2025 02:03:45 +0300
Subject: [PATCH 18/23] Update action.yml

---
 action.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/action.yml b/action.yml
index 0d3710b..afca553 100644
--- a/action.yml
+++ b/action.yml
@@ -256,7 +256,7 @@ runs:
           fi
         done
         echo "5"
-        files="$(changed_files | tr '\n' ',')"
+        files="$(echo ${changed_files} | tr '\n' ',')"
         echo "6"
         echo "${files}"
         echo "file=${files}" >> $GITHUB_OUTPUT

From 3e83905740c32bfbd0cda219e116c6aeaa3e60c7 Mon Sep 17 00:00:00 2001
From: Igor Rodionov <goruha@gmail.com>
Date: Sat, 23 Aug 2025 02:06:24 +0300
Subject: [PATCH 19/23] Fix file assignment to handle changed files correctly

---
 action.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/action.yml b/action.yml
index afca553..fb2cde7 100644
--- a/action.yml
+++ b/action.yml
@@ -256,7 +256,7 @@ runs:
           fi
         done
         echo "5"
-        files="$(echo ${changed_files} | tr '\n' ',')"
+        files="$(echo ${changed_files})"
         echo "6"
         echo "${files}"
         echo "file=${files}" >> $GITHUB_OUTPUT

From 12b3c94b191547f0fe520ed7b9b429faf3c2203f Mon Sep 17 00:00:00 2001
From: Igor Rodionov <goruha@gmail.com>
Date: Sat, 23 Aug 2025 02:08:41 +0300
Subject: [PATCH 20/23] Format changed_files output for GitHub Actions

---
 action.yml | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/action.yml b/action.yml
index fb2cde7..979fce8 100644
--- a/action.yml
+++ b/action.yml
@@ -258,8 +258,8 @@ runs:
         echo "5"
         files="$(echo ${changed_files})"
         echo "6"
-        echo "${files}"
-        echo "file=${files}" >> $GITHUB_OUTPUT
+        echo "${files// /,}"
+        echo "file=${files// /,}" >> $GITHUB_OUTPUT
 
     - uses: gaurav-nelson/github-action-markdown-link-check@v1
       if: inputs.readme_enabled == 'true' && inputs.validate_readme == 'true'

From 2d409997c2336cfc9431a50859fad4a5df54ce6e Mon Sep 17 00:00:00 2001
From: Igor Rodionov <goruha@gmail.com>
Date: Sat, 23 Aug 2025 02:13:40 +0300
Subject: [PATCH 21/23] Update action.yml

---
 action.yml | 14 --------------
 1 file changed, 14 deletions(-)

diff --git a/action.yml b/action.yml
index 979fce8..4f5e13c 100644
--- a/action.yml
+++ b/action.yml
@@ -235,30 +235,16 @@ runs:
         set +e
         atmos ${{ inputs.command }}
         # Get all changed files and process them
-        echo "1"
-        git status --porcelain
-        echo "1 - 1"
-        git status --porcelain | grep "^ M"
-        echo "1 - 2"
-        git status --porcelain | grep "^ M" | cut -c4-
-        echo "1 - 3"
         changed_files=$(git status --porcelain | grep "^ M" | cut -c4-)
         set -e
-        echo "2"
-        set +e
         for file in $changed_files; do
-          echo "3"
           # Ignore changes if they are only whitespace
           if ! git diff --quiet "$file" && git diff --ignore-all-space --ignore-blank-lines --quiet "$file"; then
-            echo "4"
             git restore "$file"
             echo "Ignoring whitespace-only changes in generated file: $file"
           fi
         done
-        echo "5"
         files="$(echo ${changed_files})"
-        echo "6"
-        echo "${files// /,}"
         echo "file=${files// /,}" >> $GITHUB_OUTPUT
 
     - uses: gaurav-nelson/github-action-markdown-link-check@v1

From 84ac402546cccdec8ddd5b8849e228719938711f Mon Sep 17 00:00:00 2001
From: Igor Rodionov <goruha@gmail.com>
Date: Sat, 23 Aug 2025 03:47:56 +0300
Subject: [PATCH 22/23] Update action.yml

---
 action.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/action.yml b/action.yml
index 4f5e13c..1d55469 100644
--- a/action.yml
+++ b/action.yml
@@ -235,7 +235,7 @@ runs:
         set +e
         atmos ${{ inputs.command }}
         # Get all changed files and process them
-        changed_files=$(git status --porcelain | grep "^ M" | cut -c4-)
+        changed_files=$(git status --porcelain | grep -E "^\s?(M|\?\?)" | cut -c4-)
         set -e
         for file in $changed_files; do
           # Ignore changes if they are only whitespace

From c59779d749b2fcd702e9a81475b3700e9d226d42 Mon Sep 17 00:00:00 2001
From: Igor Rodionov <goruha@gmail.com>
Date: Tue, 9 Sep 2025 18:55:55 +0300
Subject: [PATCH 23/23] Update action.yml

---
 action.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/action.yml b/action.yml
index 1d55469..4473fb6 100644
--- a/action.yml
+++ b/action.yml
@@ -265,7 +265,7 @@ runs:
         commit_user_name: "${{ inputs.commit_user_name }}"
         commit_user_email: "${{ inputs.commit_user_email }}"
         commit_author: "${{ inputs.commit_author }}"
-        file_pattern: '${{ steps.banner.outputs.file }},${{ steps.readme.outputs.file }}'
+        file_pattern: '${{ steps.banner.outputs.file }} ${{ steps.readme.outputs.file }}'
         push_options: '${{ inputs.commit_push_options }}'
  
     - uses: actions/github-script@v7