Remove iRods integration: delete iRods storage service, plugin, config, and docs. Update changelog. Users must use another storage backend (filesystem, MongoDB GridFS, or AWS S3).

Author: robkooper

CHANGELOG.md

@@ -5,6 +5,11 @@ All notable changes to this project will be documented in this file.
 The format is based on [Keep a Changelog](http://keepachangelog.com/)
 and this project adheres to [Semantic Versioning](http://semver.org/).
 
+## [Unreleased]
+
+### Removed
+- Removed iRods integration and dependencies. The iRods file storage service and plugin have been completely removed from the codebase. Users who were using iRods for file storage will need to configure an alternative storage backend (filesystem, MongoDB GridFS, or AWS S3).
+
 ## 1.22.1 - 2023-11-10
 
 ### Fixed

app/services/irods/IRODSByteStorageService.scala

@@ -324,30 +324,6 @@ filesystem.sourcepaths=[
   "/home/globus",
 ]
 
-# ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-# IRODSPlugin Plugin
-# ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-# To use the IRODS filesystem uncomment the following line
-#service.byteStorage=services.irods.IRODSByteStorageService
-#
-# iRODS server host name
-irods.host=localhost
-# iRODS server port number
-irods.port=1247
-# Account name
-irods.username=anonymous
-# Account password
-## if irods.username=anonymous use "" for password (irods.password="")
-irods.password=""
-# Default storage resource name
-irods.defaultStorageResource= demoResc
-# iRODS zone
-irods.zone=tempZone
-# Home directory in iRODS
-irods.userhome=/tempZone/home/public
-# Current directory in iRODS
-irods.usercurrent=/tempZone/home/public
-
 # ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 # Elasticsearch
 # ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

app/services/irods/IRODSPlugin.scala

@@ -9,7 +9,7 @@ provided for external clients to communicate with the system. These clients can
 cases as well as headless scripts for system to system communication.
 
 A service layer abstracts backend services so that individual deployments can be customized based on available resources.
-For example a user might want to store raw files on the file system, MongoDB GridFS, iRods or AWS S3 buckets.
+For example a user might want to store raw files on the file system, MongoDB GridFS, or AWS S3 buckets.
 
 When new data is added to the system, whether it is via the web interface or through the RESTful API, preprocessing is
 off-loaded to extraction services in charge of extracting appropriate data and metadata. The extraction services attempt

conf/application.conf

@@ -118,9 +118,6 @@ object ApplicationBuild extends Build {
     // Testing framework
     "org.scalatestplus" % "play_2.10" % "1.0.0" % "test",
 
-    // iRods filestorage
-    "org.irods.jargon" % "jargon-core" % "3.3.3-beta1",
-
     // jsonp return from /api
     "org.julienrf" %% "play-jsonp-filter" % "1.1",
 
@@ -153,15 +150,19 @@ object ApplicationBuild extends Build {
     routesImport += "models._",
     routesImport += "Binders._",
     templatesImport += "org.bson.types.ObjectId",
+    resolvers := Seq(
+      "Typesafe Releases Repository" at "https://repo.lightbend.com/typesafe/releases/",
+      "Typesafe repository" at "https://repo.lightbend.com/typesafe/releases/"
+    ) ++ resolvers.value.filterNot(r => r.name == "Typesafe Releases Repository" || r.name == "Typesafe repository"),
     resolvers += Resolver.url("sbt-plugin-releases", url("https://repo.scala-sbt.org/scalasbt/sbt-plugin-releases/"))(Resolver.ivyStylePatterns),
     resolvers += Resolver.url("sbt-plugin-snapshots", url("https://repo.scala-sbt.org/scalasbt/sbt-plugin-snapshots/"))(Resolver.ivyStylePatterns),
     resolvers += "Sonatype OSS Snapshots" at "https://oss.sonatype.org/content/repositories/snapshots",
     resolvers += "Aduna" at "https://maven-us.nuxeo.org/nexus/content/repositories/public/",
     //resolvers += "Forth" at "http://139.91.183.63/repository",
-    resolvers += "NCSA" at "https://opensource.ncsa.illinois.edu/nexus/content/repositories/thirdparty",
-    resolvers += "Typesafe repository" at "https://repo.lightbend.com/typesafe/releases/",
+    //resolvers += "NCSA" at "https://opensource.ncsa.illinois.edu/nexus/content/repositories/thirdparty",
     resolvers += "Maven Central" at "https://repo1.maven.org/maven2/",
 
+
     // add custom folder to the classpath, use this to add/modify clowder:
     // custom/public/stylesheets/themes     - for custom themes
     // custom/public/javascripts/previewers - for custom previewers