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Update to version 1.3.1 and reorganize changelog
- Updated version number to 1.3.1 in README.md - Added version 1.3.1 changelog entry with E2E test fixes - Created dedicated CHANGELOG.md file in docs folder - Updated README.md to reference dedicated changelog - Added 'What's Coming Next' banner for AI Agent Feedback Loop System
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README.md

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# Claude Gemini MCP Integration
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<!-- CI workflow trigger -->
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![Version](https://img.shields.io/badge/version-1.3.0-blue.svg)
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![Version](https://img.shields.io/badge/version-1.3.1-blue.svg)
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![Security](https://img.shields.io/badge/security-hardened-green.svg)
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![License](https://img.shields.io/badge/license-MIT-blue.svg)
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![Python](https://img.shields.io/badge/python-3.10+-brightgreen.svg)
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![Status](https://img.shields.io/badge/status-production%20ready-green.svg)
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![Slash Commands](https://img.shields.io/badge/slash%20commands-20+-orange.svg)
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> **🚀 What's Coming Next:**
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> I'm building an **AI Agent Feedback Loop System** that enables intelligent collaboration between Claude Code and Gemini AI. This will create a continuous improvement cycle where both AI agents learn from each other's suggestions, creating smarter code analysis and more contextual development assistance. Starting with Claude Code, then expanding to other IDEs. Stay tuned!
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**A lightweight integration that brings Google's Gemini AI capabilities to Claude Code through MCP (Model Context Protocol)**
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This project connects Claude Code (your coding assistant) with Google's Gemini AI models. Think of it as adding a second AI expert to your development team - one that can read and understand massive amounts of code at once (1M+ tokens, which is like reading hundreds of code files simultaneously).
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## Changelog
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### Version 1.3.0 (2025-07-15)
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**Major Release - Production-Ready Testing Infrastructure**
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**New Features:**
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- **Comprehensive Testing Suite** - 1,540+ lines of unit, integration, and end-to-end tests with timeout protection
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- **CI/CD Pipeline** - 3 GitHub Actions workflows for automated testing, security scanning, and dependency checks
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- **Multi-Environment Support** - Python 3.10-3.12 compatibility testing
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- **Development Workflow** - Pre-commit hooks, Makefile automation, and setup script
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- **Code Quality Tools** - MyPy type checking, Black/isort formatting, and coverage reporting
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**Security Enhancements:**
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- **Bandit Integration** - Automated security scanning with custom configuration
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- **GitLeaks Integration** - Secret detection and prevention in codebase
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- **Custom Hardening Tests** - Additional security validation beyond standard tools
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- **Enhanced Error Handling** - Improved MCP server robustness and security
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**Testing Infrastructure:**
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- **Unit Tests** - Core functionality testing with mocked dependencies
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- **Integration Tests** - API and CLI fallback testing with real interactions
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- **End-to-End Tests** - Full workflow validation including MCP server operations
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- **Security Tests** - Vulnerability scanning and hardening validation
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- **Timeout Protection** - Prevents hanging tests in CI/CD environments
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**Development Improvements:**
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- **Automated Setup** - One-command development environment setup (`./setup-dev.sh`)
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- **Pre-commit Hooks** - Automatic code quality checks before commits
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- **Makefile Commands** - Streamlined development workflow automation
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- **Enhanced Documentation** - Updated testing, setup, and security guides
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**Project Structure:**
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- 40 files changed with 5,536 lines added and 1,012 removed
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- Reorganized test structure with proper separation of concerns
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- Enhanced project configuration with `pyproject.toml`
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- Improved dependency management with development requirements
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**Potentially Breaking Changes:**
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- Updated minimum Python version requirements (backward compatibility maintained)
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- Reorganized project structure for better maintainability
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- Enhanced development setup process (existing setups continue to work)
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**Verification:**
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- All tests pass across Python 3.10-3.12
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- Security scans pass with zero critical vulnerabilities
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- Type checking passes with MyPy
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- Code formatting enforced with Black/isort
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- Existing installations continue to work without changes
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### Version 1.2.0 (2025-07-14)
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**New Features:**
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- **Enhanced Documentation Structure** - Improved README with table of contents and architecture overview
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- **Streamlined User Experience** - Better organization of setup and usage instructions
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- **Improved Issue Reporting** - Added detailed guidance for submitting issues with labels
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**Documentation Improvements:**
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- Added comprehensive architecture diagrams and explanations
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- Restructured documentation for better navigation and user experience
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- Enhanced "Need Help?" section with better issue submission guidance
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- Added link to GitHub labels for better issue categorization
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### Version 1.1.0 (2025-07-14)
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**New Features:**
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- **Streamlined Slash Commands** - Simplified implementation with individual command files
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- **Improved Command Structure** - Removed legacy `slash_commands.py` and `slash-commands.json` in favor of modular approach
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- **Enhanced Command Organization** - Individual markdown files for each command in `.claude/commands/`
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- **Better Documentation** - Comprehensive slash commands guide with examples
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**Slash Commands Added:**
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- Core: `/gemini`, `/g`, `/analyze`, `/a`, `/codebase`, `/c`
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- Focus: `/security`, `/s`, `/performance`, `/p`, `/architecture`, `/arch`
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- Assistance: `/explain`, `/e`, `/debug`, `/d`, `/review`, `/r`, `/research`
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- Improvement: `/optimize`, `/test`, `/fix`
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- Utilities: `/help`, `/status`, `/models`
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### Version 1.3.1 (2025-07-15)
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**Technical Improvements:**
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- Modular command architecture for easier maintenance and updates
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- Direct markdown-based command definitions
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- Simplified implementation with reduced dependencies
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- Improved error handling with helpful messages and usage hints
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### Version 1.0.0 (2025-07-12)
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**Major Release - Security Hardened Version**
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**New Features:**
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- Complete MCP server implementation with three core tools
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- Smart model selection (Gemini Flash for speed, Pro for depth)
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- Real-time streaming output with progress indicators
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- Shared MCP architecture supporting multiple AI clients
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- API-first approach with CLI fallback
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- Comprehensive hook system for automated workflows
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**Security Enhancements:**
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- **CRITICAL:** Fixed command injection vulnerabilities (CWE-78)
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- **CRITICAL:** Fixed path traversal vulnerabilities (CWE-22)
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- **CRITICAL:** Fixed prompt injection vulnerabilities (CWE-94)
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- **CRITICAL:** Fixed secrets exposure issues (CWE-200)
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- **CRITICAL:** Enhanced input validation (CWE-20)
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- Implemented defense-in-depth security architecture
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- Added comprehensive security testing suite
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- Created detailed security documentation
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**Bug Fixes:**
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- **E2E Test Async Mocking Issues** - Fixed critical async mocking problems that were causing CI failures
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- **Resolved "MagicMock can't be used in await expression" Error** - Properly configured async function mocking using `AsyncMock` and `side_effect` parameters
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- **Improved Test Reliability** - All E2E tests now pass consistently when `TEST_WITH_REAL_API=true` and `TEST_GOOGLE_API_KEY` is set
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**Technical Improvements:**
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- Replaced all `shell=True` usage with secure subprocess execution
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- Added path validation and directory boundary enforcement
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- Implemented input sanitization for all user inputs
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- Added API key redaction in error handling
395-
- Enhanced error handling with fail-safe defaults
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- Optimized for production deployment
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**Documentation:**
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- Complete setup guide with 5-minute quick start
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- Comprehensive security documentation
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- Architecture diagrams and code examples
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- Troubleshooting guides and best practices
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- Professional deployment patterns
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**Breaking Changes:**
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- Removed vulnerable test files and insecure code patterns
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- Enhanced security may reject previously accepted inputs
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- File access restricted to current directory tree only
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- Applied pytest-asyncio best practices for async test mocking
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- Fixed CI deployment pipeline blocking issues
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- Maintained test isolation and proper cleanup across all test suites
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---
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### Pre-1.0.0 Development Versions
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**Initial Development (July 10-12, 2025):**
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- Initial MCP server prototype (July 10)
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- Basic Gemini CLI integration (July 10-11)
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- Experimental hook implementations (July 11)
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- Security vulnerability identification and analysis (July 11-12)
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**Note:** Versions prior to 1.0.0 contained critical security vulnerabilities and should not be used in production environments.
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**📋 Complete Changelog:** For detailed release notes and full version history, see [docs/CHANGELOG.md](docs/CHANGELOG.md)
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## Contributing
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docs/CHANGELOG.md

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# Changelog
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All notable changes to this project will be documented in this file.
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The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/),
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and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
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## [1.3.1] - 2025-07-15
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### Fixed
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- **E2E Test Async Mocking Issues** - Fixed critical async mocking problems that were causing CI failures
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- **Resolved "MagicMock can't be used in await expression" Error** - Properly configured async function mocking using `AsyncMock` and `side_effect` parameters
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- **Improved Test Reliability** - All E2E tests now pass consistently when `TEST_WITH_REAL_API=true` and `TEST_GOOGLE_API_KEY` is set
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### Technical Improvements
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- Added proper async mocking with `AsyncMock` import for better async function testing
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- Updated `test_real_quick_query` to use proper async mock with `side_effect` parameter
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- Updated `test_real_code_analysis` to mock API response about performance issues
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- Updated `test_real_api_rate_limiting` to mock varied API responses for concurrent requests
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- Applied pytest-asyncio best practices for async test mocking based on official documentation
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### Testing
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- All 75 tests pass with 3 properly skipped (as expected)
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- Fixed the specific CI failure that was blocking deployments
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- Maintained test isolation and proper cleanup across all test suites
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## [1.3.0] - 2025-07-15
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### Added
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- **Comprehensive Testing Suite** - 1,540+ lines of unit, integration, and end-to-end tests with timeout protection
31+
- **CI/CD Pipeline** - 3 GitHub Actions workflows for automated testing, security scanning, and dependency checks
32+
- **Multi-Environment Support** - Python 3.10-3.12 compatibility testing
33+
- **Development Workflow** - Pre-commit hooks, Makefile automation, and setup script
34+
- **Code Quality Tools** - MyPy type checking, Black/isort formatting, and coverage reporting
35+
36+
### Security
37+
- **Bandit Integration** - Automated security scanning with custom configuration
38+
- **GitLeaks Integration** - Secret detection and prevention in codebase
39+
- **Custom Hardening Tests** - Additional security validation beyond standard tools
40+
- **Enhanced Error Handling** - Improved MCP server robustness and security
41+
42+
### Testing Infrastructure
43+
- **Unit Tests** - Core functionality testing with mocked dependencies
44+
- **Integration Tests** - API and CLI fallback testing with real interactions
45+
- **End-to-End Tests** - Full workflow validation including MCP server operations
46+
- **Security Tests** - Vulnerability scanning and hardening validation
47+
- **Timeout Protection** - Prevents hanging tests in CI/CD environments
48+
49+
### Development Improvements
50+
- **Automated Setup** - One-command development environment setup (`./setup-dev.sh`)
51+
- **Pre-commit Hooks** - Automatic code quality checks before commits
52+
- **Makefile Commands** - Streamlined development workflow automation
53+
- **Enhanced Documentation** - Updated testing, setup, and security guides
54+
55+
### Changed
56+
- **Project Structure** - 40 files changed with 5,536 lines added and 1,012 removed
57+
- **Reorganized test structure** with proper separation of concerns
58+
- **Enhanced project configuration** with `pyproject.toml`
59+
- **Improved dependency management** with development requirements
60+
61+
### Potentially Breaking Changes
62+
- Updated minimum Python version requirements (backward compatibility maintained)
63+
- Reorganized project structure for better maintainability
64+
- Enhanced development setup process (existing setups continue to work)
65+
66+
### Verification
67+
- All tests pass across Python 3.10-3.12
68+
- Security scans pass with zero critical vulnerabilities
69+
- Type checking passes with MyPy
70+
- Code formatting enforced with Black/isort
71+
- Existing installations continue to work without changes
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## [1.2.0] - 2025-07-14
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### Added
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- **Enhanced Documentation Structure** - Improved README with table of contents and architecture overview
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- **Streamlined User Experience** - Better organization of setup and usage instructions
78+
- **Improved Issue Reporting** - Added detailed guidance for submitting issues with labels
79+
80+
### Documentation
81+
- Added comprehensive architecture diagrams and explanations
82+
- Restructured documentation for better navigation and user experience
83+
- Enhanced "Need Help?" section with better issue submission guidance
84+
- Added link to GitHub labels for better issue categorization
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86+
## [1.1.0] - 2025-07-14
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88+
### Added
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- **Streamlined Slash Commands** - Simplified implementation with individual command files
90+
- **Enhanced Command Organization** - Individual markdown files for each command in `.claude/commands/`
91+
- **Better Documentation** - Comprehensive slash commands guide with examples
92+
93+
### Slash Commands Added
94+
- Core: `/gemini`, `/g`, `/analyze`, `/a`, `/codebase`, `/c`
95+
- Focus: `/security`, `/s`, `/performance`, `/p`, `/architecture`, `/arch`
96+
- Assistance: `/explain`, `/e`, `/debug`, `/d`, `/review`, `/r`, `/research`
97+
- Improvement: `/optimize`, `/test`, `/fix`
98+
- Utilities: `/help`, `/status`, `/models`
99+
100+
### Changed
101+
- **Improved Command Structure** - Removed legacy `slash_commands.py` and `slash-commands.json` in favor of modular approach
102+
103+
### Technical Improvements
104+
- Modular command architecture for easier maintenance and updates
105+
- Direct markdown-based command definitions
106+
- Simplified implementation with reduced dependencies
107+
- Improved error handling with helpful messages and usage hints
108+
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## [1.0.0] - 2025-07-12
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### Added
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- Complete MCP server implementation with three core tools
113+
- Smart model selection (Gemini Flash for speed, Pro for depth)
114+
- Real-time streaming output with progress indicators
115+
- Shared MCP architecture supporting multiple AI clients
116+
- API-first approach with CLI fallback
117+
- Comprehensive hook system for automated workflows
118+
119+
### Security
120+
- **CRITICAL:** Fixed command injection vulnerabilities (CWE-78)
121+
- **CRITICAL:** Fixed path traversal vulnerabilities (CWE-22)
122+
- **CRITICAL:** Fixed prompt injection vulnerabilities (CWE-94)
123+
- **CRITICAL:** Fixed secrets exposure issues (CWE-200)
124+
- **CRITICAL:** Enhanced input validation (CWE-20)
125+
- Implemented defense-in-depth security architecture
126+
- Added comprehensive security testing suite
127+
- Created detailed security documentation
128+
129+
### Technical Improvements
130+
- Replaced all `shell=True` usage with secure subprocess execution
131+
- Added path validation and directory boundary enforcement
132+
- Implemented input sanitization for all user inputs
133+
- Added API key redaction in error handling
134+
- Enhanced error handling with fail-safe defaults
135+
- Optimized for production deployment
136+
137+
### Documentation
138+
- Complete setup guide with 5-minute quick start
139+
- Comprehensive security documentation
140+
- Architecture diagrams and code examples
141+
- Troubleshooting guides and best practices
142+
- Professional deployment patterns
143+
144+
### Breaking Changes
145+
- Removed vulnerable test files and insecure code patterns
146+
- Enhanced security may reject previously accepted inputs
147+
- File access restricted to current directory tree only
148+
149+
## Pre-1.0.0 Development Versions
150+
151+
### Initial Development (July 10-12, 2025)
152+
- Initial MCP server prototype (July 10)
153+
- Basic Gemini CLI integration (July 10-11)
154+
- Experimental hook implementations (July 11)
155+
- Security vulnerability identification and analysis (July 11-12)
156+
157+
**Note:** Versions prior to 1.0.0 contained critical security vulnerabilities and should not be used in production environments.
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---
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## Legend
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- **Added** for new features
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- **Changed** for changes in existing functionality
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- **Deprecated** for soon-to-be removed features
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- **Removed** for now removed features
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- **Fixed** for any bug fixes
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- **Security** for vulnerability fixes

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