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Great package!
Have you looked into using joblib on this loop,
for i, (feat1, feat2) in enumerate(feature_tuples)
in feateng.py?
Seems like it could be easily parallelized. You have several global variables inside the loop, so I haven't had a chance to deconstruct this into a function that could be called via joblib. I thought it might be more straightforward for you as you are more familiar with the code.
neelkamalabi
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