resolved conflicts, hardcoded Pyrefly file extension since it's not in the API

Author: kendrickcurtis

.codacy/codacy.yaml

@@ -1,5 +1,6 @@
 runtimes:
     - [email protected]
+    - [email protected]
     - [email protected]
     - [email protected]
     - [email protected]
@@ -10,5 +11,6 @@ tools:
     - [email protected]
     - [email protected]
     - [email protected]
+    - [email protected]
     - [email protected]
     - [email protected]

.github/workflows/it-test.yml

@@ -93,34 +93,8 @@ jobs:
         continue-on-error: true
         shell: bash
         run: |
-          # Make the script executable
-          chmod +x run-tool-tests.sh
-          
-          # Initialize failed tools file
-          rm -f /tmp/failed_tools.txt
-          touch /tmp/failed_tools.txt
-          
-          # Run tests for each tool directory
-          for tool_dir in plugins/tools/*/; do
-            tool_name=$(basename "$tool_dir")
-            if [ -d "$tool_dir/test/src" ]; then
-              echo "Running tests for $tool_name..."
-              ./run-tool-tests.sh "$tool_name" || {
-                echo "❌ Test failed for $tool_name"
-                echo "$tool_name" >> /tmp/failed_tools.txt
-              }
-            fi
-          done
-          
-          # Check if any tools failed
-          if [ -s /tmp/failed_tools.txt ] && [ "$(wc -l < /tmp/failed_tools.txt)" -gt 0 ]; then
-            echo -e "\n❌ The following tools failed their tests:"
-            cat /tmp/failed_tools.txt
-            echo "::error::Some tool tests failed. Please check the logs above for details."
-            exit 1
-          else
-            echo "✅ All tool tests passed successfully!"
-          fi
+          chmod +x integration-tests/test-tools.sh
+          ./integration-tests/test-tools.sh
 
       - name: Check test results
         if: always()

README.md

@@ -71,6 +71,46 @@ Bootstraps the CLI configuration in your project's folder. This command creates
 - `--organization` (string): Organization name, required with `--api-token`
 - `--repository` (string): Repository name, required with `--api-token`
 
+### `config reset` — Reset Configuration
+
+Resets the Codacy configuration files and tool-specific configurations. This command overwrites existing configuration with either local default configurations or repository-specific configurations from Codacy.
+
+```bash
+# Reset to local default configurations
+codacy-cli config reset
+
+# Reset to repository-specific configurations from Codacy
+codacy-cli config reset --api-token <token> --provider <gh|gl|bb> --organization <org> --repository <repo>
+```
+
+**Behavior:**
+- **Local mode**: Creates default configurations for all available tools
+- **Remote mode**: Fetches and applies repository-specific configurations from Codacy
+- Prevents accidental mode switching (remote to local requires explicit flags)
+- Overwrites existing `.codacy/codacy.yaml` and tool configurations
+- Creates or updates `.codacy/.gitignore` file
+
+**Flags:** Same as `init` command (api-token, provider, organization, repository)
+
+### `config discover` — Discover Project Languages
+
+Scans a project directory to detect programming languages and automatically configures appropriate static analysis tools. This command updates both `languages-config.yaml` and `codacy.yaml` with relevant tools for detected languages.
+
+```bash
+# Discover languages in current directory
+codacy-cli config discover .
+
+# Discover languages in specific project path
+codacy-cli config discover /path/to/project
+```
+
+**Features:**
+- Automatically detects file extensions and maps them to programming languages
+- Updates `.codacy/tools-configs/languages-config.yaml` with discovered languages
+- Enables relevant tools in `codacy.yaml` based on detected languages
+- Creates tool-specific configuration files for discovered tools
+- Works in both local and cloud modes
+
 ### `install` — Install Runtimes and Tools
 
 Installs all runtimes and tools specified in `.codacy/codacy.yaml`:
@@ -172,14 +212,17 @@ codacy-cli init
 # or
 codacy-cli init --api-token <token> --provider gh --organization my-org --repository my-repo
 
-# 2. Install all required runtimes and tools
+# 2. (Optional) Discover languages and configure tools automatically
+codacy-cli config discover .
+
+# 3. Install all required runtimes and tools
 codacy-cli install
 
-# 3. Run analysis (all tools or specific tool)
+# 4. Run analysis (all tools or specific tool)
 codacy-cli analyze
 codacy-cli analyze --tool eslint
 
-# 4. Upload results to Codacy
+# 5. Upload results to Codacy
 codacy-cli upload -s eslint.sarif -c <commit-uuid> -t <project-token>
 ```
 

cli-v2.go

@@ -39,10 +39,13 @@ func main() {
 		}
 	}
 
-	// Check if command is init/update
-	if len(os.Args) > 1 && (os.Args[1] == "init" || os.Args[1] == "update") {
-		cmd.Execute()
-		return
+	// Check if command is init/update/version/help - these don't require configuration
+	if len(os.Args) > 1 {
+		cmdName := os.Args[1]
+		if cmdName == "init" || cmdName == "update" || cmdName == "version" || cmdName == "help" {
+			cmd.Execute()
+			return
+		}
 	}
 
 	// All other commands require a configuration file