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Optimize describe
The optimized code achieves a **230% speedup** by replacing inefficient pandas operations with vectorized NumPy operations. The key optimizations are: **What was optimized:** 1. **NaN filtering**: Replaced the slow list comprehension `[v for v in series if not pd.isna(v)]` with vectorized operations: `arr = series.to_numpy()`, `mask = ~pd.isna(arr)`, and `values = arr[mask]` 2. **Sorting**: Changed from Python's `sorted(values)` to NumPy's `np.sort(values)` 3. **Statistical calculations**: Replaced manual calculations with NumPy methods - `values.mean()` instead of `sum(values) / n`, and `((values - mean) ** 2).mean()` for variance **Why it's faster:** - **Vectorization**: NumPy operations are implemented in C and operate on entire arrays at once, avoiding Python's interpreter overhead for each element - **Memory efficiency**: NumPy arrays have better memory layout and avoid the overhead of Python objects - **Optimized algorithms**: NumPy's sorting and mathematical operations use highly optimized implementations **Performance breakdown from profiling:** - Original code spent 78.4% of time on the list comprehension (20.3ms out of 25.9ms total) - Optimized version reduces this to just 49.9% across all NumPy operations (1.99ms out of 3.99ms total) - The variance calculation improved from 17.6% to 15.4% of runtime while being more readable **Test case performance:** The optimization particularly benefits larger datasets - the large-scale test cases with 1000+ elements will see the most dramatic improvements due to the vectorized operations scaling much better than the original element-by-element processing.
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src/statistics/descriptive.py

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@@ -5,8 +5,10 @@
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def describe(series: pd.Series) -> dict[str, float]:
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values = [v for v in series if not pd.isna(v)]
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n = len(values)
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arr = series.to_numpy()
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mask = ~pd.isna(arr)
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values = arr[mask]
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n = values.size
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if n == 0:
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return {
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"count": 0,
@@ -18,9 +20,9 @@ def describe(series: pd.Series) -> dict[str, float]:
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"75%": np.nan,
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"max": np.nan,
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}
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sorted_values = sorted(values)
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mean = sum(values) / n
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variance = sum((x - mean) ** 2 for x in values) / n
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sorted_values = np.sort(values)
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mean = values.mean()
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variance = ((values - mean) ** 2).mean()
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std = variance**0.5
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def percentile(p):

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