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Update publications list with new entries and links
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‎results/publications.html‎

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@@ -10,72 +10,162 @@ <h1><span class="material-icons">newspaper</span>Publications</h1>
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<table class="table">
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<thead>
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<tr>
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<th>Type</th>
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<th>Title</th>
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<th>Authors</th>
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<th>Year</th>
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</tr>
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<tr>
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<th>Type</th>
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<th>Title</th>
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<th>Authors</th>
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<th>Year</th>
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</tr>
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2020
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<tr>
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<td>Conference</td>
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<td><a href="https://www.vldb.org/pvldb/vol16/p1923-marinelli.pdf" target="_blank" rel="noopener">Towards
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Migration-Free" Just-in-Case" Data Archival for Future Cloud Data Lakes Using Synthetic DNA</a></td>
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<td>Eugenio Marinelli, Yiqing Yan, Virginie Magnone, Charlotte Dumargne, Pascal Barbry, Thomas Heinis, Raja
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Appuswamy
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</td>
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<td>2023</td>
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</tr>
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<tr>
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<td>Journal</td>
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<td><a href="https://www.nature.com/articles/s41598-023-43172-0#Fun" target="_blank" rel="noopener">Scaling
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logical density of DNA storage with enzymatically-ligated composite motifs</td>
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<td>Yiqing Yan, Nimesh Pinnamaneni, Sachin Chalapati, Conor Crosbie, Raja Appuswamy</td>
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<td>2023</td>
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</tr>
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<tr>
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<td>Conference</td>
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<td>Open, cross-architecture acceleration of data analytics with SYCL and RISC-V</td>
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<td>Ivan Kabadzhov, Jose Morgado, Aleksander Ilic, Raja Appuswamy</td>
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<td>2024 <small>(under submission)</small></td>
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</tr>
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<tr>
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<td>Conference</td>
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<td><a href="https://dl.acm.org/doi/abs/10.1145/3648115.3648122" target="_blank" rel="noopener">Migrating CUDA
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to SYCL: A HEP Case Study with ROOT RDataFrame</td>
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<td>Jolly Chen, Monica Dessole, Ana-Lucia Varbanescu</td>
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<td>2024</td>
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</tr>
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<tr>
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<td>Conference</td>
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<td><a href="https://link.springer.com/chapter/10.1007/978-3-031-48803-0_15" target="_blank" rel="noopener">A
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Performance Modelling-Driven Approach to Hardware Resource Scaling</td>
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<td>Alexandre Rodrigues, Leonel Sousa, and Aleksandar Ilic</td>
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<td>2024</td>
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</tr>
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<tr>
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<td>Journal</td>
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<td><a href="https://www.nature.com/articles/s41598-024-65317-5" target="_blank" rel="noopener">Distributed
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transformer for high order epistasis detection in large-scale datasets</td>
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<td>Miguel Graça, Ricardo Nobre, Leonel Sousa & Aleksandar Ilic</td>
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<td>2024</td>
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</tr>
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<tr>
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<td>Conference</td>
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<td><a href="https://dl.acm.org/doi/pdf/10.1145/3648115.3648117" target="_blank" rel="noopener">AdaptiveCpp
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Stdpar: C++ Standard Parallelism Integrated Into A SYCL Compiler</td>
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<td>Aksel Alpay, Vincent Heueline</td>
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<td>2024</td>
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</tr>
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<tr>
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<td>Conference</td>
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<td><a href="https://dl.acm.org/doi/pdf/10.1145/3648115.3648120" target="_blank" rel="noopener">SYCL-Bench 2020:
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Benchmarking SYCL 2020 on AMD, Intel, and NVIDIA GPUs</td>
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<td>Luigi Crisci, Lorenzo Carpentieri, Peter Thoman, Aksel Alpay, Vincent Heuveline, Biagio Cosenza</td>
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<td>2024</td>
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</tr>
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<tr>
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<td>Conference</td>
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<td><a href="https://www.vldb.org/pvldb/vol16/p1923-marinelli.pdf" target="_blank" rel="noopener">Towards
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Migration-Free" Just-in-Case" Data Archival for Future Cloud Data Lakes Using Synthetic DNA</a></td>
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<td>Eugenio Marinelli, Yiqing Yan, Virginie Magnone, Charlotte Dumargne, Pascal Barbry, Thomas Heinis, Raja
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Appuswamy
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</td>
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<td>2023</td>
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</tr>
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<tr>
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<td>Journal</td>
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<td><a href="https://www.nature.com/articles/s41598-023-43172-0#Fun" target="_blank" rel="noopener">Scaling
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logical density of DNA storage with enzymatically-ligated composite motifs</td>
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<td>Yiqing Yan, Nimesh Pinnamaneni, Sachin Chalapati, Conor Crosbie, Raja Appuswamy</td>
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<td>2023</td>
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</tr>
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<tr>
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<td>Conference</td>
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<td><a href="https://publication.eurecom.fr/publication/7702" target="_blank" rel="noopener">Open,
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cross-architecture acceleration of data analytics with SYCL and RISC-V</a></td>
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<td>Ivan Donchev Kabadzhov, Jose Morgado, Aleksandar Ilic, Raja Appuswamy</td>
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<td>2025 <small>(Heteropar/EuroPar)</small></td>
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</tr>
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<tr>
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<td>Conference</td>
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<td><a href="https://dl.acm.org/doi/abs/10.1145/3648115.3648122" target="_blank" rel="noopener">Migrating CUDA
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to SYCL: A HEP Case Study with ROOT RDataFrame</td>
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<td>Jolly Chen, Monica Dessole, Ana-Lucia Varbanescu</td>
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<td>2024</td>
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</tr>
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<tr>
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<td>Conference</td>
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<td><a href="https://link.springer.com/chapter/10.1007/978-3-031-48803-0_15" target="_blank" rel="noopener">A
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Performance Modelling-Driven Approach to Hardware Resource Scaling</td>
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<td>Alexandre Rodrigues, Leonel Sousa, and Aleksandar Ilic</td>
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<td>2024</td>
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</tr>
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<tr>
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<td>Journal</td>
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<td><a href="https://www.nature.com/articles/s41598-024-65317-5" target="_blank" rel="noopener">Distributed
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transformer for high order epistasis detection in large-scale datasets</td>
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<td>Miguel Graça, Ricardo Nobre, Leonel Sousa & Aleksandar Ilic</td>
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<td>2024</td>
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</tr>
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<tr>
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<td>Conference</td>
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<td><a href="https://dl.acm.org/doi/pdf/10.1145/3648115.3648117" target="_blank" rel="noopener">AdaptiveCpp
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Stdpar: C++ Standard Parallelism Integrated Into A SYCL Compiler</td>
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<td>Aksel Alpay, Vincent Heueline</td>
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<td>2024</td>
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</tr>
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<tr>
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<td>Conference</td>
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<td><a href="https://dl.acm.org/doi/pdf/10.1145/3648115.3648120" target="_blank" rel="noopener">SYCL-Bench
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2020:
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Benchmarking SYCL 2020 on AMD, Intel, and NVIDIA GPUs</td>
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<td>Luigi Crisci, Lorenzo Carpentieri, Peter Thoman, Aksel Alpay, Vincent Heuveline, Biagio Cosenza</td>
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<td>2024</td>
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</tr>
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<tr>
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<td>Conference</td>
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<td><a href="https://link.springer.com/chapter/10.1007/978-3-031-40843-4_36" target="_blank"
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rel="noopener">Performance modelling-driven optimization of RISC-V hardware for efficient SpMV</a></td>
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<td>Alexandre Rodrigues, Leonel Sousa, and Aleksandar Ilic</td>
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<td>2023</td>
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</tr>
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<tr>
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<td>Conference</td>
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<td><a
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href="https://research-information.bris.ac.uk/en/publications/efficient-tree-based-parallel-algorithms-for-n-body-simulations-u/"
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target="_blank" rel="noopener">Efficient Tree-based Parallel Algorithms for N-Body Simulations Using C++
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Standard Parallelism</a></td>
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<td>Lane Cassell, T., Deakin, T., Alpay, A., Heuveline, V., & Brito Gadeschi, G.</td>
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<td>2024</td>
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</tr>
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<tr>
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<td>Conference</td>
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<td><a href="https://dl.acm.org/doi/10.1145/3731125.3731127" target="_blank" rel="noopener">Adaptivity in
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AdaptiveCpp: Optimizing Performance by Leveraging Runtime Information During JIT-Compilation</a></td>
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<td>Aksel Alpay, Vincent Heueline</td>
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<td>2025</td>
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</tr>
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<tr>
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<td>Conference</td>
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<td><a href="https://arxiv.org/abs/2502.20947" target="_blank" rel="noopener">Enhancing software-hardware
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co-design for HEP by low-overhead profiling of single- and multi-threaded programs on diverse
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architectures with Adaptyst</a></td>
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<td>Maksymilian Graczyk, Stefan Roiser</td>
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<td>2024</td>
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</tr>
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<tr>
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<td>Conference</td>
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<td><a href="https://arxiv.org/abs/2511.13928" target="_blank" rel="noopener">Enabling Heterogeneous
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Performance Analysis for Scientific Workloads</a></td>
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<td>Maksymilian Graczyk, Vincent Desbiolles, Stefan Roiser, Andrea Guerrieri</td>
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<td>2025</td>
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</tr>
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<tr>
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<td>Journal</td>
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<td><a href="https://doi.org/10.1002/cpe.70369" target="_blank" rel="noopener">Bridging Portability and
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Performance in Sparse Tensor Computations Using SYCL</a></td>
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<td>Daniel Pacheco, Miguel Graça, Filipe Borralho, Leonel Sousa, and Aleksandar Ilic</td>
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<td>2025</td>
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</tr>
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<tr>
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<td>Conference</td>
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<td><a href="https://iconsneuromorphic.cc" target="_blank" rel="noopener">Constant Depth Threshold Circuits
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for Exhaustive Epistasis Detection</a></td>
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<td>André Ribeiro, Aleksandar Ilic, and Leonel Sousa</td>
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<td>2025</td>
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</tr>
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<tr>
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<td>Journal</td>
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<td><a href="https://doi.org/10.1016/j.jpdc.104989" target="_blank" rel="noopener">SpEpistasis: A sparse
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approach for three-way epistasis detection</a></td>
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<td>Diogo Marques, Leonel Sousa, and Aleksandar Ilic</td>
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<td>2025</td>
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</tr>
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<tr>
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<td>Conference</td>
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<td><a href="https://doi.org/10.1109/IISWC63097.2024.00016" target="_blank" rel="noopener">CARM Tool:
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Cache-Aware Roofline Model Automatic Benchmarking and Application Analysis</a></td>
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<td>José Morgado, Leonel Sousa, and Aleksandar Ilic</td>
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<td>2024</td>
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</tr>
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<tr>
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<td>Conference</td>
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<td><a href="https://doi.org/10.1007/978-3-031-90200-0_39" target="_blank" rel="noopener">Exploring the Limits
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of Cross-Platform Sparse Tensor Processing</a></td>
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<td>Filipe Borralho, Leonel Sousa, and Aleksandar Ilic</td>
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<td>2024</td>
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</tr>
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<tr>
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<td>Conference</td>
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<td><a href="https://doi.org/10.1109/IISWC66894.2025.00029" target="_blank" rel="noopener">PRISM:
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Processing-In-Memory Sparse MTTKRP for Tensor Decomposition Acceleration</a></td>
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<td>Daniel Pacheco, Leonel Sousa, and Aleksandar Ilic</td>
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<td>2025</td>
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</tr>
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<tr>
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<td>Journal</td>
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<td><a href="https://www.biorxiv.org/content/10.64898/2025.12.09.693348v1" target="_blank"
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rel="noopener">Accurate Variant Classification in Tumour-Only Genomic Data Using Interpretable Tabular
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Models</a></td>
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<td>Lorenzo Tattini, Yiqing Yan, Nimisha Chaturvedi, Raja Appuswamy</td>
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<td>2025</td>
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</tr>
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</tbody>
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</table>
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</div>
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</section>
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</section>

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