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I wanted to check the number of rows in the database corresponding to each plate - measurement number, and this is what I found:
code: print(df.groupby(["plate", "measurement"]).size())
plate measurement
2 M1 383
M3 383
M4 383
M6 383
3 M1 383
M2 383
M3 383
M4 383
M6 383
4 M2 383
M3 383
M4 383
M5 383
M6 383
5 M1 383
M2 383
M3 383
M4 383
M5 383
M6 383
6 M2 383
M3 383
M4 383
M5 383
M6 383
7 M1 383
M2 383
M3 383
M4 383
M5 383
M6 383
9 M1 383
M2 383
M3 383
M5 383
M6 383
10 M1 383
M2 383
M3 383
M4 383
M5 383
99 M1 768
M2 384
M3 384
M4 384
M5 768
M6 384
A few points stand out. I think it would be simpler to treat A1 the same as other wells, and insert a row with all "NaN"s so all the counts end up at 384, since in plate 99 A1 is not blank. Secondly, 99-M1 and 99-M5 have been repeated at different dates, leading to this surprising number. We should delete the older version if that data is being thrown away, but I'm not sure if the old data is still meaningful, just wanted to draw attention.
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bugSomething isn't workingSomething isn't working