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Merge pull request #159 from coding-for-reproducible-research/course-history
Update workflow file to upload err logs
2 parents 5515d01 + 8d7602a commit 4a78955

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+48
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lines changed

6 files changed

+48
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lines changed

‎.github/workflows/build-book.yml

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@@ -24,7 +24,7 @@ jobs:
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# (optional) Cache your executed notebooks between runs
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- name: Cache executed notebooks
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uses: actions/cache@v3
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uses: actions/cache@v4
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with:
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path: _build/.jupyter_cache
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key: jupyter-book-cache-${{ hashFiles('requirements.txt') }}
@@ -33,3 +33,11 @@ jobs:
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- name: Build the book
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run: |
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jupyter-book build .
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# Always upload logs, even if build succeeds
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- name: Upload error logs
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uses: actions/upload-artifact@v4
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with:
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name: error-logs
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path: _build/html/reports/pathways/related_courses.err.log
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continue-on-error: true

‎_static/workshops_network_hpc.html

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@@ -282,7 +282,7 @@ <h1></h1>
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// parsing and collecting nodes and edges from the python
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nodes = new vis.DataSet([{"color": "#FFD700", "id": "Introduction to Unix", "label": "Introduction to Unix", "level": 1, "shape": "dot", "size": 10, "title": "Course Name: Introduction to Unix\nCourse Pre-reqs: None\nSubsequent Courses: Introduction to HPC, Introduction to Version Control with Git and GitHub"}, {"color": "#FFD700", "id": "Introduction to HPC", "label": "Introduction to HPC", "level": 2, "shape": "dot", "size": 10, "title": "Course Name: Introduction to HPC\nCourse Pre-reqs: Introduction to Unix\nSubsequent Courses: None"}, {"color": "#FFD700", "id": "Introduction to Version Control with Git and GitHub", "label": "Introduction to Version Control with Git and GitHub", "level": 2, "shape": "dot", "size": 10, "title": "Course Name: Introduction to Version Control with Git and GitHub\nCourse Pre-reqs: Introduction to Unix\nSubsequent Courses: Intermediate Version Control"}, {"color": "#FFD700", "id": "Intermediate Version Control", "label": "Intermediate Version Control", "level": 3, "shape": "dot", "size": 10, "title": "Course Name: Intermediate Version Control\nCourse Pre-reqs: Introduction to Version Control with Git and GitHub\nSubsequent Courses: None"}, {"color": "#FFD700", "id": "Introduction to Python", "label": "Introduction to Python", "level": 1, "shape": "dot", "size": 10, "title": "Course Name: Introduction to Python\nCourse Pre-reqs: None\nSubsequent Courses: None"}]);
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nodes = new vis.DataSet([{"color": "#4682B4", "id": "Introduction to Unix", "label": "Introduction to Unix", "level": 1, "shape": "dot", "size": 10, "title": "Course Name: Introduction to Unix\nCourse Pre-reqs: None\nSubsequent Courses: Introduction to HPC, Introduction to Version Control with Git and GitHub"}, {"color": "#4682B4", "id": "Introduction to HPC", "label": "Introduction to HPC", "level": 2, "shape": "dot", "size": 10, "title": "Course Name: Introduction to HPC\nCourse Pre-reqs: Introduction to Unix\nSubsequent Courses: None"}, {"color": "#4682B4", "id": "Introduction to Version Control with Git and GitHub", "label": "Introduction to Version Control with Git and GitHub", "level": 2, "shape": "dot", "size": 10, "title": "Course Name: Introduction to Version Control with Git and GitHub\nCourse Pre-reqs: Introduction to Unix\nSubsequent Courses: Intermediate Version Control"}, {"color": "#4682B4", "id": "Intermediate Version Control", "label": "Intermediate Version Control", "level": 3, "shape": "dot", "size": 10, "title": "Course Name: Intermediate Version Control\nCourse Pre-reqs: Introduction to Version Control with Git and GitHub\nSubsequent Courses: None"}, {"color": "#4682B4", "id": "Introduction to Python", "label": "Introduction to Python", "level": 1, "shape": "dot", "size": 10, "title": "Course Name: Introduction to Python\nCourse Pre-reqs: None\nSubsequent Courses: None"}]);
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edges = new vis.DataSet([{"arrows": "to", "from": "Introduction to Unix", "to": "Introduction to HPC", "width": 1}, {"arrows": "to", "from": "Introduction to Unix", "to": "Introduction to Version Control with Git and GitHub", "width": 1}, {"arrows": "to", "from": "Introduction to Version Control with Git and GitHub", "to": "Intermediate Version Control", "width": 1}]);
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nodeColors = {};

‎_static/workshops_network_python_ds.html

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@@ -282,7 +282,7 @@ <h1></h1>
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// parsing and collecting nodes and edges from the python
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nodes = new vis.DataSet([{"color": "#FF6347", "id": "Introduction to Version Control with Git and GitHub", "label": "Introduction to Version Control with Git and GitHub", "level": 2, "shape": "dot", "size": 10, "title": "Course Name: Introduction to Version Control with Git and GitHub\nCourse Pre-reqs: Introduction to Unix\nSubsequent Courses: Intermediate Version Control"}, {"color": "#FF6347", "id": "Intermediate Version Control", "label": "Intermediate Version Control", "level": 3, "shape": "dot", "size": 10, "title": "Course Name: Intermediate Version Control\nCourse Pre-reqs: Introduction to Version Control with Git and GitHub\nSubsequent Courses: None"}, {"color": "#FF6347", "id": "Introduction to Unix", "label": "Introduction to Unix", "level": 1, "shape": "dot", "size": 10, "title": "Course Name: Introduction to Unix\nCourse Pre-reqs: None\nSubsequent Courses: Introduction to Version Control with Git and GitHub"}, {"color": "#FF6347", "id": "Introduction to Python", "label": "Introduction to Python", "level": 1, "shape": "dot", "size": 10, "title": "Course Name: Introduction to Python\nCourse Pre-reqs: None\nSubsequent Courses: Python for Data Analysis "}, {"color": "#FF6347", "id": "Python for Data Analysis ", "label": "Python for Data Analysis ", "level": 2, "shape": "dot", "size": 10, "title": "Course Name: Python for Data Analysis \nCourse Pre-reqs: Introduction to Python\nSubsequent Courses: None"}]);
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nodes = new vis.DataSet([{"color": "#FFD700", "id": "Introduction to Version Control with Git and GitHub", "label": "Introduction to Version Control with Git and GitHub", "level": 2, "shape": "dot", "size": 10, "title": "Course Name: Introduction to Version Control with Git and GitHub\nCourse Pre-reqs: Introduction to Unix\nSubsequent Courses: Intermediate Version Control"}, {"color": "#FFD700", "id": "Intermediate Version Control", "label": "Intermediate Version Control", "level": 3, "shape": "dot", "size": 10, "title": "Course Name: Intermediate Version Control\nCourse Pre-reqs: Introduction to Version Control with Git and GitHub\nSubsequent Courses: None"}, {"color": "#FFD700", "id": "Introduction to Unix", "label": "Introduction to Unix", "level": 1, "shape": "dot", "size": 10, "title": "Course Name: Introduction to Unix\nCourse Pre-reqs: None\nSubsequent Courses: Introduction to Version Control with Git and GitHub"}, {"color": "#FFD700", "id": "Introduction to Python", "label": "Introduction to Python", "level": 1, "shape": "dot", "size": 10, "title": "Course Name: Introduction to Python\nCourse Pre-reqs: None\nSubsequent Courses: Python for Data Analysis "}, {"color": "#FFD700", "id": "Python for Data Analysis ", "label": "Python for Data Analysis ", "level": 2, "shape": "dot", "size": 10, "title": "Course Name: Python for Data Analysis \nCourse Pre-reqs: Introduction to Python\nSubsequent Courses: None"}]);
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edges = new vis.DataSet([{"arrows": "to", "from": "Introduction to Version Control with Git and GitHub", "to": "Intermediate Version Control", "width": 1}, {"arrows": "to", "from": "Introduction to Unix", "to": "Introduction to Version Control with Git and GitHub", "width": 1}, {"arrows": "to", "from": "Introduction to Python", "to": "Python for Data Analysis ", "width": 1}]);
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nodeColors = {};

‎_static/workshops_network_r_ds.html

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@@ -282,7 +282,7 @@ <h1></h1>
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// parsing and collecting nodes and edges from the python
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nodes = new vis.DataSet([{"color": "#4682B4", "id": "Introduction to R", "label": "Introduction to R", "level": 1, "shape": "dot", "size": 10, "title": "Course Name: Introduction to R\nCourse Pre-reqs: None\nSubsequent Courses: Regression analysis with R, Working With Data In R"}, {"color": "#4682B4", "id": "Regression analysis with R", "label": "Regression analysis with R", "level": 2, "shape": "dot", "size": 10, "title": "Course Name: Regression analysis with R\nCourse Pre-reqs: Introduction to R\nSubsequent Courses: Advanced Regression Analysis With R "}, {"color": "#4682B4", "id": "Working With Data In R", "label": "Working With Data In R", "level": 2, "shape": "dot", "size": 10, "title": "Course Name: Working With Data In R\nCourse Pre-reqs: Introduction to R\nSubsequent Courses: None"}, {"color": "#4682B4", "id": "Advanced Regression Analysis With R ", "label": "Advanced Regression Analysis With R ", "level": 3, "shape": "dot", "size": 10, "title": "Course Name: Advanced Regression Analysis With R \nCourse Pre-reqs: Regression analysis with R\nSubsequent Courses: None"}, {"color": "#4682B4", "id": "Introduction to Version Control with Git and GitHub", "label": "Introduction to Version Control with Git and GitHub", "level": 2, "shape": "dot", "size": 10, "title": "Course Name: Introduction to Version Control with Git and GitHub\nCourse Pre-reqs: Introduction to Unix\nSubsequent Courses: Intermediate Version Control"}, {"color": "#4682B4", "id": "Intermediate Version Control", "label": "Intermediate Version Control", "level": 3, "shape": "dot", "size": 10, "title": "Course Name: Intermediate Version Control\nCourse Pre-reqs: Introduction to Version Control with Git and GitHub\nSubsequent Courses: None"}, {"color": "#4682B4", "id": "Introduction to Unix", "label": "Introduction to Unix", "level": 1, "shape": "dot", "size": 10, "title": "Course Name: Introduction to Unix\nCourse Pre-reqs: None\nSubsequent Courses: Introduction to Version Control with Git and GitHub"}]);
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nodes = new vis.DataSet([{"color": "#FF6347", "id": "Introduction to R", "label": "Introduction to R", "level": 1, "shape": "dot", "size": 10, "title": "Course Name: Introduction to R\nCourse Pre-reqs: None\nSubsequent Courses: Regression analysis with R, Working With Data In R"}, {"color": "#FF6347", "id": "Regression analysis with R", "label": "Regression analysis with R", "level": 2, "shape": "dot", "size": 10, "title": "Course Name: Regression analysis with R\nCourse Pre-reqs: Introduction to R\nSubsequent Courses: Advanced Regression Analysis With R "}, {"color": "#FF6347", "id": "Working With Data In R", "label": "Working With Data In R", "level": 2, "shape": "dot", "size": 10, "title": "Course Name: Working With Data In R\nCourse Pre-reqs: Introduction to R\nSubsequent Courses: None"}, {"color": "#FF6347", "id": "Advanced Regression Analysis With R ", "label": "Advanced Regression Analysis With R ", "level": 3, "shape": "dot", "size": 10, "title": "Course Name: Advanced Regression Analysis With R \nCourse Pre-reqs: Regression analysis with R\nSubsequent Courses: None"}, {"color": "#FF6347", "id": "Introduction to Version Control with Git and GitHub", "label": "Introduction to Version Control with Git and GitHub", "level": 2, "shape": "dot", "size": 10, "title": "Course Name: Introduction to Version Control with Git and GitHub\nCourse Pre-reqs: Introduction to Unix\nSubsequent Courses: Intermediate Version Control"}, {"color": "#FF6347", "id": "Intermediate Version Control", "label": "Intermediate Version Control", "level": 3, "shape": "dot", "size": 10, "title": "Course Name: Intermediate Version Control\nCourse Pre-reqs: Introduction to Version Control with Git and GitHub\nSubsequent Courses: None"}, {"color": "#FF6347", "id": "Introduction to Unix", "label": "Introduction to Unix", "level": 1, "shape": "dot", "size": 10, "title": "Course Name: Introduction to Unix\nCourse Pre-reqs: None\nSubsequent Courses: Introduction to Version Control with Git and GitHub"}]);
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edges = new vis.DataSet([{"arrows": "to", "from": "Introduction to R", "to": "Regression analysis with R", "width": 1}, {"arrows": "to", "from": "Introduction to R", "to": "Working With Data In R", "width": 1}, {"arrows": "to", "from": "Regression analysis with R", "to": "Advanced Regression Analysis With R ", "width": 1}, {"arrows": "to", "from": "Introduction to Version Control with Git and GitHub", "to": "Intermediate Version Control", "width": 1}, {"arrows": "to", "from": "Introduction to Unix", "to": "Introduction to Version Control with Git and GitHub", "width": 1}]);
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nodeColors = {};

‎pathways/related_courses.ipynb

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},
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{
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"cell_type": "code",
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"execution_count": 2,
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"execution_count": 1,
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"id": "028da1b5-7197-4a20-ba0b-e40e6b966cf9",
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"metadata": {
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"editable": true,
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"name": "stdout",
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"output_type": "stream",
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"text": [
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"../_static/workshops_network_hpc.html\n",
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"../_static/workshops_network_python_ds.html\n",
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"../_static/workshops_network_r_ds.html\n"
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"../_static/workshops_network_r_ds.html\n",
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"../_static/workshops_network_hpc.html\n"
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]
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}
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],
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},
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{
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"cell_type": "code",
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"execution_count": 3,
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"execution_count": 2,
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"id": "98e15d08-6dfe-4606-b388-1ea76d9d0bc8",
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"metadata": {
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"editable": true,
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{
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"data": {
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"text/html": [
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"<div style='text-align: center;'><h3>HPC Pathway</h3></div><iframe id='iframe-hpc' src='../_static/workshops_network_hpc.html' width='100%' height='750px' style='border:none;'></iframe>\n",
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"<div style='text-align: center;'><h3>Python DS Pathway</h3></div><iframe id='iframe-python_ds' src='../_static/workshops_network_python_ds.html' width='100%' height='750px' style='border:none;'></iframe>\n",
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" <script>\n",
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" function adjustIframeHeight_iframe-hpc() {\n",
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" const iframe = document.getElementById('iframe-hpc');\n",
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" function adjustIframeHeight_iframe-python_ds() {\n",
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" const iframe = document.getElementById('iframe-python_ds');\n",
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" if (iframe) {\n",
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" iframe.style.height = iframe.offsetWidth + 'px';\n",
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" }\n",
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" }\n",
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"\n",
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" // Adjust height on load and resize\n",
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" window.onload = adjustIframeHeight_iframe-hpc;\n",
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" window.onresize = adjustIframeHeight_iframe-hpc;\n",
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" window.onload = adjustIframeHeight_iframe-python_ds;\n",
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" window.onresize = adjustIframeHeight_iframe-python_ds;\n",
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" </script>\n",
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" "
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],
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{
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"data": {
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"text/html": [
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"<div style='text-align: center;'><h3>Python DS Pathway</h3></div><iframe id='iframe-python_ds' src='../_static/workshops_network_python_ds.html' width='100%' height='750px' style='border:none;'></iframe>\n",
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"<div style='text-align: center;'><h3>R DS Pathway</h3></div><iframe id='iframe-r_ds' src='../_static/workshops_network_r_ds.html' width='100%' height='750px' style='border:none;'></iframe>\n",
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" <script>\n",
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" function adjustIframeHeight_iframe-python_ds() {\n",
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" const iframe = document.getElementById('iframe-python_ds');\n",
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" function adjustIframeHeight_iframe-r_ds() {\n",
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" const iframe = document.getElementById('iframe-r_ds');\n",
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" if (iframe) {\n",
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" iframe.style.height = iframe.offsetWidth + 'px';\n",
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" }\n",
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" }\n",
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"\n",
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" // Adjust height on load and resize\n",
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" window.onload = adjustIframeHeight_iframe-python_ds;\n",
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" window.onresize = adjustIframeHeight_iframe-python_ds;\n",
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" window.onload = adjustIframeHeight_iframe-r_ds;\n",
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" window.onresize = adjustIframeHeight_iframe-r_ds;\n",
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" </script>\n",
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" "
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],
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{
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"data": {
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"text/html": [
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"<div style='text-align: center;'><h3>R DS Pathway</h3></div><iframe id='iframe-r_ds' src='../_static/workshops_network_r_ds.html' width='100%' height='750px' style='border:none;'></iframe>\n",
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"<div style='text-align: center;'><h3>HPC Pathway</h3></div><iframe id='iframe-hpc' src='../_static/workshops_network_hpc.html' width='100%' height='750px' style='border:none;'></iframe>\n",
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" <script>\n",
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" function adjustIframeHeight_iframe-r_ds() {\n",
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" const iframe = document.getElementById('iframe-r_ds');\n",
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" function adjustIframeHeight_iframe-hpc() {\n",
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" const iframe = document.getElementById('iframe-hpc');\n",
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" if (iframe) {\n",
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" iframe.style.height = iframe.offsetWidth + 'px';\n",
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" }\n",
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" }\n",
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"\n",
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" // Adjust height on load and resize\n",
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" window.onload = adjustIframeHeight_iframe-r_ds;\n",
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" window.onresize = adjustIframeHeight_iframe-r_ds;\n",
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" window.onload = adjustIframeHeight_iframe-hpc;\n",
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" window.onresize = adjustIframeHeight_iframe-hpc;\n",
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" </script>\n",
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" "
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],
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},
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"outputs": [],
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"source": []
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},
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{
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"cell_type": "code",
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"execution_count": null,
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"id": "d390070b-e14f-4296-8d10-552f34c764f7",
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"metadata": {},
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"outputs": [],
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"source": []
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},
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{
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"cell_type": "code",
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"execution_count": null,
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"id": "f67fbdd8-2041-4c13-bf89-0cf5bd8252ae",
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"metadata": {},
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"outputs": [],
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"source": []
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}
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],
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"metadata": {

‎requirements.txt

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@@ -5,3 +5,4 @@ ghp-import
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jupyterquiz
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matplotlib
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scikit-learn
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pyvis

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