Merge pull request #249 from coding-for-reproducible-research/intro-to-markdown-in-r

Intro to markdown in r Course Addition

Author: liamjberrisford

_config.yml

@@ -91,3 +91,11 @@ execute:
       - 'individual_modules/improve_your_r_code/data_table.ipynb'
       - 'individual_modules/improve_your_r_code/parallelisation.ipynb'
       - 'individual_modules/improve_your_r_code/rcpp.ipynb'
+      - 'individual_modules/Introduction_to_Markdown_in_R/Background_to_Markdown.md'
+      - 'individual_modules/Introduction_to_Markdown_in_R/Course_Outro.md'
+      - 'individual_modules/Introduction_to_Markdown_in_R/Getting_Started_with_Markdown_in_R.md'
+      - 'individual_modules/Introduction_to_Markdown_in_R/Processing_RMarkdown_Files.md'
+      - 'individual_modules/Introduction_to_Markdown_in_R/RMarkdown_Components_Embedded_Code.md'
+      - 'individual_modules/Introduction_to_Markdown_in_R/RMarkdown_Components_Formatted_Text.md'
+      - 'individual_modules/Introduction_to_Markdown_in_R/RMarkdown_Components_Visual_Prelude.md'
+      - 'individual_modules/Introduction_to_Markdown_in_R/RMarkdown_Components_YAML_Header.md'

_static/multiple_regression_hyperplane.html

@@ -282,7 +282,7 @@ <h1></h1>
 
 
                   // parsing and collecting nodes and edges from the python
-                  nodes = new vis.DataSet([{"color": "#FFD700", "id": "Introduction to HPC", "label": "Introduction to HPC", "level": 2, "shape": "dot", "size": 10, "title": "Course Name: Introduction to HPC\nCourse Pre-reqs: Introduction to Unix\nSubsequent Courses: Parallel Computing"}, {"color": "#FFD700", "id": "Parallel Computing", "label": "Parallel Computing", "level": 3, "shape": "dot", "size": 10, "title": "Course Name: Parallel Computing\nCourse Pre-reqs: Introduction to HPC\nSubsequent Courses: None"}, {"color": "#FFD700", "id": "Introduction to Unix", "label": "Introduction to Unix", "level": 1, "shape": "dot", "size": 10, "title": "Course Name: Introduction to Unix\nCourse Pre-reqs: None\nSubsequent Courses: Introduction to HPC, Introduction to Version Control with Git and GitHub"}, {"color": "#FFD700", "id": "Introduction to Version Control with Git and GitHub", "label": "Introduction to Version Control with Git and GitHub", "level": 2, "shape": "dot", "size": 10, "title": "Course Name: Introduction to Version Control with Git and GitHub\nCourse Pre-reqs: Introduction to Unix\nSubsequent Courses: Intermediate Version Control"}, {"color": "#FFD700", "id": "Intermediate Version Control", "label": "Intermediate Version Control", "level": 3, "shape": "dot", "size": 10, "title": "Course Name: Intermediate Version Control\nCourse Pre-reqs: Introduction to Version Control with Git and GitHub\nSubsequent Courses: None"}, {"color": "#FFD700", "id": "Introduction to Python", "label": "Introduction to Python", "level": 1, "shape": "dot", "size": 10, "title": "Course Name: Introduction to Python\nCourse Pre-reqs: None\nSubsequent Courses: None"}]);
+                  nodes = new vis.DataSet([{"color": "#4682B4", "id": "Introduction to HPC", "label": "Introduction to HPC", "level": 2, "shape": "dot", "size": 10, "title": "Course Name: Introduction to HPC\nCourse Pre-reqs: Introduction to Unix\nSubsequent Courses: Parallel Computing"}, {"color": "#4682B4", "id": "Parallel Computing", "label": "Parallel Computing", "level": 3, "shape": "dot", "size": 10, "title": "Course Name: Parallel Computing\nCourse Pre-reqs: Introduction to HPC\nSubsequent Courses: None"}, {"color": "#4682B4", "id": "Introduction to Unix", "label": "Introduction to Unix", "level": 1, "shape": "dot", "size": 10, "title": "Course Name: Introduction to Unix\nCourse Pre-reqs: None\nSubsequent Courses: Introduction to HPC, Introduction to Version Control with Git and GitHub"}, {"color": "#4682B4", "id": "Introduction to Version Control with Git and GitHub", "label": "Introduction to Version Control with Git and GitHub", "level": 2, "shape": "dot", "size": 10, "title": "Course Name: Introduction to Version Control with Git and GitHub\nCourse Pre-reqs: Introduction to Unix\nSubsequent Courses: Intermediate Version Control"}, {"color": "#4682B4", "id": "Intermediate Version Control", "label": "Intermediate Version Control", "level": 3, "shape": "dot", "size": 10, "title": "Course Name: Intermediate Version Control\nCourse Pre-reqs: Introduction to Version Control with Git and GitHub\nSubsequent Courses: None"}, {"color": "#4682B4", "id": "Introduction to Python", "label": "Introduction to Python", "level": 1, "shape": "dot", "size": 10, "title": "Course Name: Introduction to Python\nCourse Pre-reqs: None\nSubsequent Courses: None"}]);
                   edges = new vis.DataSet([{"arrows": "to", "from": "Introduction to HPC", "to": "Parallel Computing", "width": 1}, {"arrows": "to", "from": "Introduction to Unix", "to": "Introduction to HPC", "width": 1}, {"arrows": "to", "from": "Introduction to Unix", "to": "Introduction to Version Control with Git and GitHub", "width": 1}, {"arrows": "to", "from": "Introduction to Version Control with Git and GitHub", "to": "Intermediate Version Control", "width": 1}]);
 
                   nodeColors = {};

_static/multiple_regression_hyperplane_2.html

@@ -282,8 +282,8 @@ <h1></h1>
 
 
                   // parsing and collecting nodes and edges from the python
-                  nodes = new vis.DataSet([{"color": "#4682B4", "id": "Introduction to Version Control with Git and GitHub", "label": "Introduction to Version Control with Git and GitHub", "level": 2, "shape": "dot", "size": 10, "title": "Course Name: Introduction to Version Control with Git and GitHub\nCourse Pre-reqs: Introduction to Unix\nSubsequent Courses: Intermediate Version Control"}, {"color": "#4682B4", "id": "Intermediate Version Control", "label": "Intermediate Version Control", "level": 3, "shape": "dot", "size": 10, "title": "Course Name: Intermediate Version Control\nCourse Pre-reqs: Introduction to Version Control with Git and GitHub\nSubsequent Courses: None"}, {"color": "#4682B4", "id": "Introduction to Unix", "label": "Introduction to Unix", "level": 1, "shape": "dot", "size": 10, "title": "Course Name: Introduction to Unix\nCourse Pre-reqs: None\nSubsequent Courses: Introduction to Version Control with Git and GitHub"}, {"color": "#4682B4", "id": "Introduction to Python", "label": "Introduction to Python", "level": 1, "shape": "dot", "size": 10, "title": "Course Name: Introduction to Python\nCourse Pre-reqs: None\nSubsequent Courses: Python for Data Analysis "}, {"color": "#4682B4", "id": "Python for Data Analysis ", "label": "Python for Data Analysis ", "level": 2, "shape": "dot", "size": 10, "title": "Course Name: Python for Data Analysis \nCourse Pre-reqs: Introduction to Python\nSubsequent Courses: None"}]);
-                  edges = new vis.DataSet([{"arrows": "to", "from": "Introduction to Version Control with Git and GitHub", "to": "Intermediate Version Control", "width": 1}, {"arrows": "to", "from": "Introduction to Unix", "to": "Introduction to Version Control with Git and GitHub", "width": 1}, {"arrows": "to", "from": "Introduction to Python", "to": "Python for Data Analysis ", "width": 1}]);
+                  nodes = new vis.DataSet([{"color": "#FFD700", "id": "Introduction to Version Control with Git and GitHub", "label": "Introduction to Version Control with Git and GitHub", "level": 2, "shape": "dot", "size": 10, "title": "Course Name: Introduction to Version Control with Git and GitHub\nCourse Pre-reqs: Introduction to Unix\nSubsequent Courses: Intermediate Version Control"}, {"color": "#FFD700", "id": "Intermediate Version Control", "label": "Intermediate Version Control", "level": 3, "shape": "dot", "size": 10, "title": "Course Name: Intermediate Version Control\nCourse Pre-reqs: Introduction to Version Control with Git and GitHub\nSubsequent Courses: None"}, {"color": "#FFD700", "id": "Introduction to Unix", "label": "Introduction to Unix", "level": 1, "shape": "dot", "size": 10, "title": "Course Name: Introduction to Unix\nCourse Pre-reqs: None\nSubsequent Courses: Introduction to Version Control with Git and GitHub"}, {"color": "#FFD700", "id": "Introduction to Python", "label": "Introduction to Python", "level": 1, "shape": "dot", "size": 10, "title": "Course Name: Introduction to Python\nCourse Pre-reqs: None\nSubsequent Courses: Python for Data Analysis"}, {"color": "#FFD700", "id": "Python for Data Analysis", "label": "Python for Data Analysis", "level": 2, "shape": "dot", "size": 10, "title": "Course Name: Python for Data Analysis\nCourse Pre-reqs: Introduction to Python\nSubsequent Courses: Introduction to Machine Learning"}, {"color": "#FFD700", "id": "Introduction to Machine Learning", "label": "Introduction to Machine Learning", "level": 3, "shape": "dot", "size": 10, "title": "Course Name: Introduction to Machine Learning\nCourse Pre-reqs: Python for Data Analysis\nSubsequent Courses: None"}]);
+                  edges = new vis.DataSet([{"arrows": "to", "from": "Introduction to Version Control with Git and GitHub", "to": "Intermediate Version Control", "width": 1}, {"arrows": "to", "from": "Introduction to Unix", "to": "Introduction to Version Control with Git and GitHub", "width": 1}, {"arrows": "to", "from": "Introduction to Python", "to": "Python for Data Analysis", "width": 1}, {"arrows": "to", "from": "Python for Data Analysis", "to": "Introduction to Machine Learning", "width": 1}]);
 
                   nodeColors = {};
                   allNodes = nodes.get({ returnType: "Object" });

_static/workshops_network_hpc.html

@@ -32,6 +32,7 @@ parts:
                   - file: programme_information/advanced_regression_analysis_with_r
                   - file: programme_information/working_with_data_in_r
                   - file: programme_information/improve_your_r_code
+                  - file: programme_information/Introduction_to_Markdown_in_R
               - file: programme_information/unix
                 sections:
                   - file: programme_information/intro_to_unix
@@ -193,6 +194,16 @@ parts:
                   - file: individual_modules/improve_your_r_code/data_table
                   - file: individual_modules/improve_your_r_code/parallelisation
                   - file: individual_modules/improve_your_r_code/rcpp
+              - file: individual_modules/section_landing_pages/Introduction_to_Markdown_in_R
+                sections:
+                  - file: individual_modules/Introduction_to_Markdown_in_R/Background_to_Markdown
+                  - file: individual_modules/Introduction_to_Markdown_in_R/Getting_Started_with_Markdown_in_R
+                  - file: individual_modules/Introduction_to_Markdown_in_R/RMarkdown_Components_Visual_Prelude
+                  - file: individual_modules/Introduction_to_Markdown_in_R/RMarkdown_Components_YAML_Header
+                  - file: individual_modules/Introduction_to_Markdown_in_R/RMarkdown_Components_Formatted_Text
+                  - file: individual_modules/Introduction_to_Markdown_in_R/RMarkdown_Components_Embedded_Code
+                  - file: individual_modules/Introduction_to_Markdown_in_R/Processing_RMarkdown_Files
+                  - file: individual_modules/Introduction_to_Markdown_in_R/Course_Outro
           - file: course_homepages/unix
             sections:
               - file: individual_modules/section_landing_pages/introduction_to_unix