Merge pull request #341 from coding-for-reproducible-research/accessibility_patches

Accessibility Patches

Author: liamjberrisford

_config.yml

@@ -115,3 +115,5 @@ execute:
       - 'individual_modules/introduction_to_python/analysis_task_3.ipynb'
       - 'short_courses/r_unit_testing.ipynb'
       - 'short_courses/r_functions.ipynb'
+      - 'short_courses/r_functions.ipynb'
+      - 'individual_modules/markdown_with_python/ch2_liveOutput.ipynb'

individual_modules/introduction_to_r/data_types.ipynb

@@ -1956,7 +1956,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 23,
+   "execution_count": 3,
    "id": "71ed3b63-2c93-4469-9a40-f9c8bf169dd9",
    "metadata": {
     "editable": true,
@@ -1968,43 +1968,25 @@
    "outputs": [
     {
      "data": {
-      "text/html": [
-       "<table class=\"dataframe\">\n",
-       "<caption>A matrix: 2 × 3 of type int</caption>\n",
-       "<tbody>\n",
-       "\t<tr><td>1</td><td>3</td><td>5</td></tr>\n",
-       "\t<tr><td>2</td><td>4</td><td>6</td></tr>\n",
-       "</tbody>\n",
-       "</table>\n"
-      ],
-      "text/latex": [
-       "A matrix: 2 × 3 of type int\n",
-       "\\begin{tabular}{lll}\n",
-       "\t 1 & 3 & 5\\\\\n",
-       "\t 2 & 4 & 6\\\\\n",
-       "\\end{tabular}\n"
-      ],
-      "text/markdown": [
+      "text/plain": [
        "\n",
-       "A matrix: 2 × 3 of type int\n",
        "\n",
-       "| 1 | 3 | 5 |\n",
-       "| 2 | 4 | 6 |\n",
-       "\n"
-      ],
-      "text/plain": [
-       "     [,1] [,2] [,3]\n",
-       "[1,] 1    3    5   \n",
-       "[2,] 2    4    6   "
+       "Table: A matrix: 2 × 3 of type int\n",
+       "\n",
+       "|   |   |   |\n",
+       "|--:|--:|--:|\n",
+       "|  1|  3|  5|\n",
+       "|  2|  4|  6|"
       ]
      },
      "metadata": {},
      "output_type": "display_data"
     }
    ],
    "source": [
-    "m<-matrix(1:6, nrow=2, ncol=3)\n",
-    "m"
+    "library(knitr)\n",
+    "m <- matrix(1:6, nrow = 2, ncol = 3)\n",
+    "kable(m, caption = \"A matrix: 2 × 3 of type int\")"
    ]
   },
   {

individual_modules/introduction_to_r/plots.ipynb

@@ -1126,7 +1126,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 22,
+   "execution_count": 1,
    "id": "c95a2b0c-e0dc-4aec-a564-e365a5d6825d",
    "metadata": {
     "editable": true,
@@ -1138,42 +1138,27 @@
    "outputs": [
     {
      "data": {
-      "text/html": [
-       "<table class=\"dataframe\">\n",
-       "<caption>A matrix: 2 × 2 of type dbl</caption>\n",
-       "<tbody>\n",
-       "\t<tr><td>1</td><td>1</td></tr>\n",
-       "\t<tr><td>2</td><td>3</td></tr>\n",
-       "</tbody>\n",
-       "</table>\n"
-      ],
-      "text/latex": [
-       "A matrix: 2 × 2 of type dbl\n",
-       "\\begin{tabular}{ll}\n",
-       "\t 1 & 1\\\\\n",
-       "\t 2 & 3\\\\\n",
-       "\\end{tabular}\n"
-      ],
-      "text/markdown": [
+      "text/plain": [
        "\n",
-       "A matrix: 2 × 2 of type dbl\n",
        "\n",
-       "| 1 | 1 |\n",
-       "| 2 | 3 |\n",
-       "\n"
-      ],
-      "text/plain": [
-       "     [,1] [,2]\n",
-       "[1,] 1    1   \n",
-       "[2,] 2    3   "
+       "Table: A matrix: 2 × 2 filled by row\n",
+       "\n",
+       "|   |   |\n",
+       "|--:|--:|\n",
+       "|  1|  1|\n",
+       "|  2|  3|"
       ]
      },
      "metadata": {},
      "output_type": "display_data"
     }
    ],
    "source": [
-    "matrix(c(1, 1, 2, 3), nrow = 2, ncol = 2, byrow = TRUE)"
+    "library(knitr)\n",
+    "\n",
+    "m <- matrix(c(1, 1, 2, 3), nrow = 2, ncol = 2, byrow = TRUE)\n",
+    "\n",
+    "kable(m, caption = \"A matrix: 2 × 2 filled by row\")\n"
    ]
   },
   {