covert setup.py to setup.cfg

Thank you https://pypi.org/project/setuptools-py2cfg/ !

Author: mr-c

.github/workflows/ci-tests.yml

@@ -80,8 +80,8 @@ jobs:
         step: [lint-readme, pydocstyle]
 
     env:
-      py-semver: "3.11"
-      TOXENV: ${{ format('py311-{0}', matrix.step) }}
+      py-semver: "3.12"
+      TOXENV: ${{ format('py312-{0}', matrix.step) }}
 
     steps:
       - uses: actions/checkout@v4
@@ -130,7 +130,7 @@ jobs:
       - name: Set up Python
         uses: actions/setup-python@v5
         with:
-          python-version: 3.11
+          python-version: 3.12
           cache: pip
           cache-dependency-path: |
             requirements.txt

Makefile

@@ -28,8 +28,8 @@ EXTRAS=
 # `[[` conditional expressions.
 PYSOURCES=$(filter-out $(MODULE)/parser/cwl_v%,$(shell find $(MODULE) -name "*.py")) \
 	  $(wildcard tests/*.py) create_cwl_from_objects.py load_cwl_by_path.py \
-	  setup.py ${MODULE}/parser/cwl_v1_?_utils.py docs/conf.py
-DEVPKGS=diff_cover  pylint pep257 pydocstyle flake8 tox tox-pyenv \
+	  ${MODULE}/parser/cwl_v1_?_utils.py docs/conf.py
+DEVPKGS=build diff_cover  pylint pep257 pydocstyle flake8 'tox<4' tox-pyenv \
 	isort wheel autoflake pyupgrade bandit auto-walrus \
 	-rlint-requirements.txt -rtest-requirements.txt -rmypy-requirements.txt
 DEBDEVPKGS=pep8 python-autopep8 pylint python-coverage pydocstyle sloccount \
@@ -52,8 +52,8 @@ cleanup: sort_imports format flake8 diff_pydocstyle_report
 install-dep: install-dependencies
 
 install-dependencies:
+	pip install -U pip setuptools wheel
 	pip install --upgrade $(DEVPKGS)
-	pip install -r requirements.txt -r mypy-requirements.txt -r docs/requirements.txt
 
 ## install-deb-dep        : install many of the dev dependencies via apt-get
 install-deb-dep:
@@ -65,13 +65,14 @@ install: FORCE
 
 ## dev                    : install the cwl-utils package in dev mode
 dev: install-dep
+	pip install -U pip setuptools wheel
 	pip install -e .$(EXTRAS)
 
 ## dist                   : create a module package for distribution
 dist: dist/${MODULE}-$(VERSION).tar.gz
 
 dist/${MODULE}-$(VERSION).tar.gz: $(SOURCES)
-	python setup.py sdist bdist_wheel
+	python -m build
 
 ## docs                   : make the docs
 docs: FORCE
@@ -80,7 +81,6 @@ docs: FORCE
 ## clean                  : clean up all temporary / machine-generated files
 clean: FORCE
 	rm -f ${MODULE}/*.pyc tests/*.pyc
-	python setup.py clean --all || true
 	rm -Rf .coverage
 	rm -f diff-cover.html
 
@@ -98,7 +98,7 @@ pydocstyle: $(PYSOURCES)
 	pydocstyle --add-ignore=D100,D101,D102,D103 $^ || true
 
 pydocstyle_report.txt: $(PYSOURCES)
-	pydocstyle setup.py $^ > $@ 2>&1 || true
+	pydocstyle $^ > $@ 2>&1 || true
 
 ## diff_pydocstyle_report : check Python docstring style for changed files only
 diff_pydocstyle_report: pydocstyle_report.txt
@@ -170,7 +170,7 @@ list-author-emails:
 	@git log --format='%aN,%aE' | sort -u | grep -v 'root'
 
 mypy3: mypy
-mypy: $(filter-out setup.py,${PYSOURCES})
+mypy: ${PYSOURCES}
 	MYPYPATH=$$MYPYPATH:mypy-stubs mypy $^
 
 shellcheck: FORCE
@@ -186,8 +186,8 @@ release-test: FORCE
 
 release: release-test
 	. testenv2/bin/activate && \
-		python testenv2/src/${PACKAGE}/setup.py sdist bdist_wheel
-	. testenv2/bin/activate && \
+		pip install build && \
+		python -m build testenv2/src/${PACKAGE} && \
 		pip install twine && \
 		twine upload testenv2/src/${PACKAGE}/dist/* && \
 		git tag ${VERSION} && git push --tags

pyproject.toml

@@ -0,0 +1,3 @@
+[build-system]
+requires = ["setuptools"]
+build-backend = "setuptools.build_meta"

release-test.sh

@@ -18,8 +18,8 @@ else
     HEAD=$(git rev-parse HEAD)
 fi
 run_tests="bin/py.test --pyargs ${module}"
-pipver=20.3.3  # minimum required version of pip for Python 3.10
-setuptoolsver=50.0.0  # required for Python 3.10
+pipver=23.1  # minimum required version of pip for Python 3.12
+setuptoolsver=67.6.1  # required for Python 3.12
 DIR="$( cd "$( dirname "${BASH_SOURCE[0]}" )" >/dev/null && pwd )"
 
 rm -Rf testenv? || /bin/true
@@ -63,7 +63,7 @@ rm -f lib/python-wheels/setuptools* \
 # The following can fail if you haven't pushed your commits to ${repo}
 pip install -e "git+${repo}@${HEAD}#egg=${package}${extras}"
 pushd src/${package}
-pip install -rtest-requirements.txt
+pip install -rtest-requirements.txt build
 make dist
 make test
 cp dist/${package}*tar.gz ../../../testenv3/
@@ -84,7 +84,7 @@ rm -f lib/python-wheels/setuptools* \
 	&& pip install --force-reinstall -U pip==${pipver} \
         && pip install setuptools==${setuptoolsver} wheel
 package_tar=$(find . -name "${package}*tar.gz")
-pip install "-r${DIR}/test-requirements.txt"
+pip install "-r${DIR}/test-requirements.txt" build
 pip install "${package_tar}${extras}"
 mkdir out
 tar --extract --directory=out -z -f ${package}*.tar.gz

setup.cfg

@@ -1,12 +1,63 @@
 [aliases]
-test=pytest
+test = pytest
+
+[metadata]
+name = cwl-utils
+version = attr: cwl_utils.__meta__.__version__
+author = Common workflow language working group
+author_email = [email protected]
+license = Apache 2.0
+url = https://github.com/common-workflow-language/cwl-utils
+long_description = file: README.rst
+long_description_content_type = text/x-rst
+classifiers =
+    Environment :: Console
+    Intended Audience :: Science/Research
+    License :: OSI Approved :: Apache Software License
+    Operating System :: POSIX
+    Operating System :: MacOS :: MacOS X
+    Programming Language :: Python :: 3.8
+    Programming Language :: Python :: 3.9
+    Programming Language :: Python :: 3.10
+    Programming Language :: Python :: 3.11
+    Programming Language :: Python :: 3.12
+    Typing :: Typed
 
 [tool:pytest]
 testpaths = tests
 
+[options]
+package_dir =
+    cwl_utils.parser = cwl_utils/parser
+    cwl_utils.tests = tests
+    cwl_utils.testdata = testdata
+packages =
+    cwl_utils
+    cwl_utils.parser
+    cwl_utils.tests
+    cwl_utils.testdata
+install_requires = file: requirements.txt
+include_package_data = True
+python_requires = >=3.8
+test_suite = tests
+tests_require =
+	pytest<8
+	pytest-mock
+
+[options.entry_points]
+console_scripts =
+    cwl-cite-extract=cwl_utils.cite_extract:main
+    cwl-docker-extract=cwl_utils.docker_extract:main
+    cwl-expression-refactor=cwl_utils.expression_refactor:main
+    cwl-graph-split=cwl_utils.graph_split:main
+    cwl-normalizer=cwl_utils.normalizer:main
+
 [tool:isort]
 multi_line_output = 3
 include_trailing_comma = True
 force_grid_wrap = 0
 use_parentheses = True
 line_length = 88
+
+[options.extras_require]
+pretty = cwlformat

setup.py

@@ -4,9 +4,9 @@ envlist =
   py3{8,9,10,11,12}-unit,
   py3{8,9,10,11,12}-bandit,
   py3{8,9,10,11,12}-mypy,
-  py311-lint-readme,
-  py311-pydocstyle
-
+  py312-lint-readme,
+  py312-pydocstyle
+isolated_build = True
 skip_missing_interpreters = True
 
 [pytest]
@@ -26,8 +26,8 @@ description =
   py3{8,9,10,11,12}-lint: Lint the Python code
   py3{8,9,10,11,12}-bandit: Search for common security issues
   py3{8,9,10,11,12}-mypy: Check for type safety
-  py311-pydocstyle: docstring style checker
-  py311-lint-readme: Lint the README.rst->.md conversion
+  py312-pydocstyle: docstring style checker
+  py312-lint-readme: Lint the README.rst->.md conversion
 
 passenv =
   CI
@@ -56,28 +56,27 @@ allowlist_externals =
   py3{8,9,10,11,12}-{mypy,shellcheck,lint,unit}: make
 
 skip_install =
-  py{8,9,10,11,12}-lint: true
-  py{8,9,10,11,12}-bandit: true
+  py3{8,9,10,11,12}-lint: true
+  py3{8,9,10,11,12}-bandit: true
 
 extras =
   py3{8,9,10,11,12}-unit: pretty
 
-[testenv:py311-pydocstyle]
+[testenv:py312-pydocstyle]
 allowlist_externals = make
 commands = make diff_pydocstyle_report
 deps =
     pydocstyle
     diff-cover
 skip_install = true
 
-[testenv:py311-lint-readme]
+[testenv:py312-lint-readme]
 description = Lint the README.rst->.md conversion
 commands =
-  python setup.py sdist
-  python setup.py bdist_wheel
-  twine check dist/*
+  make clean dist
+  twine check dist/cwl[-_]utils*
 deps =
     twine
-    wheel
+    build
     readme_renderer[rst]
 skip_install = true