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Peter Amstutz
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Merge branch 'master' into rc1_feedback
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CommandLineTool.yml

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type: documentation
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doc:
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# Common Workflow Language (CWL) Command Line Tool Description, v1.1.0-dev1
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# Common Workflow Language (CWL) Command Line Tool Description, v1.1
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This version:
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* https://w3id.org/cwl/v1.1.0-dev1/
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* https://w3id.org/cwl/v1.1/
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Current version:
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* https://w3id.org/cwl/
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- {$include: intro.md}
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## Introduction to the CWL Command Line Tool standard v1.1.0-dev1
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## Introduction to the CWL Command Line Tool standard v1.1
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This specification represents the latest development release from the
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CWL group. Since the v1.0 release, v1.1 introduces the
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following updates to the CWL Command Line Tool standard.
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Documents should use `cwlVersion: v1.1.0-dev1` to make use of new
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syntax and features introduced in v1.1.0-dev1. Existing v1.0 documents
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Documents should use `cwlVersion: v1.1` to make use of new
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syntax and features introduced in v1.1. Existing v1.0 documents
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should be trivially updatable by changing `cwlVersion`, however
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CWL documents that relied on previously undefined or
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underspecified behavior may have slightly different behavior in
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v1.1.0-dev1.
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v1.1.
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## Changelog
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type, or a valid expression which returns a value having one
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of the the other types defined for that field.
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See also the [CWL Workflow Description, v1.1.0-dev1 changelog](Workflow.html#Changelog).
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See also the [CWL Workflow Description, v1.1 changelog](Workflow.html#Changelog).
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## Purpose
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Process.yml

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$graph:
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- name: "Common Workflow Language, v1.1.0-dev1"
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- name: "Common Workflow Language, v1.1"
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type: documentation
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doc: {$include: concepts.md}
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- cwl:draft-4.dev3
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- cwl:v1.0.dev4
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- cwl:v1.0
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- cwl:v1.1.0-dev1 # a dash is required by the semver 2.0 rules
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- cwl:v1.1.0-dev1 # a dash is required by the semver 2.0 rules
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- cwl:v1.1
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- name: CWLType
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type: enum

README.md

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You can render this using https://github.com/common-workflow-language/cwl-website/blob/master/website.sh
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The current rendering is at https://www.commonwl.org/v1.1.0-dev1/
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The current rendering is at https://www.commonwl.org/v1.1/

Workflow.yml

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type: documentation
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doc:
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# Common Workflow Language (CWL) Workflow Description, v1.1.0-dev1
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# Common Workflow Language (CWL) Workflow Description, v1.1
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This version:
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* https://w3id.org/cwl/v1.1.0-dev1/
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* https://w3id.org/cwl/v1.1/
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Current version:
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* https://w3id.org/cwl/
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## Introduction to CWL Workflow standard v1.1.0-dev1
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## Introduction to CWL Workflow standard v1.1
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This specification represents the latest stable release from the
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CWL group. Since the v1.0 release, v1.1.0-dev1 introduces the
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CWL group. Since the v1.0 release, v1.1 introduces the
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following updates to the CWL Workflow standard.
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Documents should to use `cwlVersion: v1.1.0-dev1` to make use of new
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syntax and features introduced in v1.1.0-dev1. Existing v1.0 documents
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Documents should to use `cwlVersion: v1.1` to make use of new
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syntax and features introduced in v1.1. Existing v1.0 documents
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should be trivially updatable by changing `cwlVersion`, however
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CWL documents that relied on previously undefined or
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underspecified behavior may have slightly different behavior in
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v1.1.0-dev1.
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v1.1.
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## Changelog
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type, or a valid expression which returns a value having one
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of the the other types defined for that field.
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See also the [CWL Command Line Tool Description, v1.1.0-dev1 changelog](CommandLineTool.html#Changelog).
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See also the [CWL Command Line Tool Description, v1.1 changelog](CommandLineTool.html#Changelog).
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## Purpose
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concepts.md

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[Semantic Annotations for Linked Avro Data (SALAD) Specification](SchemaSalad.html).
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An implementation may formally validate the structure of a CWL document using
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SALAD schemas located at
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https://github.com/common-workflow-language/common-workflow-language/tree/master/v1.1.0-dev1
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https://github.com/common-workflow-language/common-workflow-language/tree/master/v1.1
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### map
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Note: This section is non-normative.
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> type: array<ComplexType> |
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> type: array<ComplexType> |
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> map<`key_field`, ComplexType>
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```
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Option one specific example using [Workflow](Workflow.html#Workflow).[inputs](Workflow.html#WorkflowInputParameter):
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> array<InputParameter> |
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> map<`id`, `type` | InputParameter>
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> array<InputParameter> |
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> map<`id`, `type` | InputParameter>
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Option two specific example using [SoftwareRequirement](#SoftwareRequirement).[packages](#SoftwarePackage):
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> array<SoftwarePackage> |
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`
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> type: array<ComplexType> |
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```
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Option three specific example using [SoftwareRequirement](#SoftwareRequirement).[packages](#SoftwarePackage):
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Requirements specified in a parent Workflow are inherited by step processes
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only the `InlineJavascriptRequirement`, `SchemaDefRequirement`, `DockerRequirement`,
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`SoftwareRequirement`, `InitialWorkDirRequirement`, `EnvVarRequirement`,
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`SoftwareRequirement`, `InitialWorkDirRequirement`, `EnvVarRequirement`,
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`ShellCommandRequirement`, `ResourceRequirement` are valid.
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*As good practice, it is best to have process requirements be self-contained,

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