Add tests for timelimit in workflow

Author: bogdang989

conformance_tests.yaml

@@ -2810,6 +2810,35 @@
   doc: Test expression in time limit
   tags: [ command_line_tool, timelimit, inline_javascript ]
 
+- job: tests/empty.json
+  should_fail: true
+  tool: tests/timelimit-wf.cwl
+  label: timelimit_basic_wf
+  doc: Test that workflow fails when exceeding time limit
+  tags: [ workflow, timelimit ]
+
+- job: tests/empty.json
+  should_fail: true
+  tool: tests/timelimit2-wf.cwl
+  label: timelimit_invalid_wf
+  doc: Test invalid time limit value workflow level
+  tags: [ workflow, timelimit ]
+
+- job: tests/empty.json
+  output:
+    o: time passed
+  tool: tests/timelimit3-wf.cwl
+  label: timelimit_zero_unlimited_wf
+  doc: Test zero timelimit means no limit in workflow
+  tags: [ workflow, timelimit ]
+
+- job: tests/empty.json
+  should_fail: true
+  tool: tests/timelimit4.cwl
+  label: timelimit_from_expression_wf
+  doc: Test expression in time limit in workflow
+  tags: [ workflow, timelimit, inline_javascript ]
+
 - job: tests/empty.json
   output: {}
   tool: tests/networkaccess.cwl

tests/timelimit-wf.cwl

@@ -0,0 +1,34 @@
+#!/usr/bin/env cwl-runner
+class: Workflow
+cwlVersion: v1.1.0-dev1
+
+requirements:
+  TimeLimit:
+    timelimit: 3
+
+inputs:
+  i:
+    type: int?
+
+outputs:
+  o:
+    type: string?
+    outputSource: step1/o
+
+steps:
+  step1:
+    in:
+      i: i
+    out: [o]
+    run:
+      class: CommandLineTool
+      baseCommand: ["sleep", "10"]
+      inputs:
+        i:
+          type: int?
+      outputs:
+        o:
+          type: string?
+          outputBinding:
+            outputEval: "time passed"
+      

tests/timelimit2-wf.cwl

@@ -0,0 +1,34 @@
+#!/usr/bin/env cwl-runner
+class: Workflow
+cwlVersion: v1.1.0-dev1
+
+requirements:
+  TimeLimit:
+    timelimit: -1
+
+inputs:
+  i:
+    type: int?
+
+outputs:
+  o:
+    type: string?
+    outputSource: step1/o
+
+steps:
+  step1:
+    in:
+      i: i
+    out: [o]
+    run:
+      class: CommandLineTool
+      baseCommand: ["sleep", "10"]
+      inputs:
+        i:
+          type: int?
+      outputs:
+        o:
+          type: string?
+          outputBinding:
+            outputEval: "time passed"
+      

tests/timelimit3-wf.cwl

@@ -0,0 +1,34 @@
+#!/usr/bin/env cwl-runner
+class: Workflow
+cwlVersion: v1.1.0-dev1
+
+requirements:
+  TimeLimit:
+    timelimit: 0
+
+inputs:
+  i:
+    type: int?
+
+outputs:
+  o:
+    type: string?
+    outputSource: step1/o
+
+steps:
+  step1:
+    in:
+      i: i
+    out: [o]
+    run:
+      class: CommandLineTool
+      baseCommand: ["sleep", "10"]
+      inputs:
+        i:
+          type: int?
+      outputs:
+        o:
+          type: string?
+          outputBinding:
+            outputEval: "time passed"
+      

tests/timelimit4-wf.cwl

@@ -0,0 +1,35 @@
+#!/usr/bin/env cwl-runner
+class: Workflow
+cwlVersion: v1.1.0-dev1
+
+requirements:
+  TimeLimit:
+    timelimit: $(1+2)
+  InlineJavascriptRequirement: {}
+
+inputs:
+  i:
+    type: int?
+
+outputs:
+  o:
+    type: string?
+    outputSource: step1/o
+
+steps:
+  step1:
+    in:
+      i: i
+    out: [o]
+    run:
+      class: CommandLineTool
+      baseCommand: ["sleep", "10"]
+      inputs:
+        i:
+          type: int?
+      outputs:
+        o:
+          type: string?
+          outputBinding:
+            outputEval: "time passed"
+