test for parameter references in CommandLineTool.arguments

Fixes: common-workflow-language/common-workflow-language#706

Author: mr-c

conformance_tests.yaml

@@ -3481,3 +3481,47 @@
   output:
     their_name: "Foo Bar"
   tags: [ require, command_line_tool ]
+
+- id: paramref_arguments_runtime
+  job: tests/empty.json
+  tool: tests/paramref_arguments_runtime.cwl
+  doc: confirm that $runtime is available to parameter references in arguments
+  tags: [ required, command_line_tool ]
+  output:
+    runtime:
+      cores: Any
+      outdir: Any
+      outdirSize: Any
+      ram: Any
+      tmpdir: Any
+      tmpdirSize: Any
+
+- id: paramref_arguments_self
+  tool: tests/paramref_arguments_self.cwl
+  job: tests/empty.json
+  doc: confirm that $self is available and set to null in arguments
+  tags: [ required, command_line_tool ]
+  output:
+    self: null
+
+- id: paramref_arguments_inputs
+  job: tests/empty.json
+  tool: tests/paramref_arguments_inputs.cwl
+  doc: confirm that $inputs is available to parameter references in arguments
+  tags: [ required, command_line_tool ]
+  output:
+    result:
+      a_double: 1000000000000000000000000000000000000000000
+      a_float: 4.2
+      a_long: 4147483647
+      a_string: z
+      a_string_array: [ a, b, c ]
+      a_true: true
+      an_array_of_doubles: [ 1000000000000000000000000000000000000000000, -1000000000000000000000000000000000000000000 ]
+      an_array_of_falses: [ false, false, false ]
+      an_array_of_floats: [ 2.3, 4.2 ]
+      an_array_of_ints: [ 42, 23 ]
+      an_array_of_longs: [ 4147483647, -4147483647 ]
+      an_array_of_mixed_booleans: [ false, true, false ]
+      an_array_of_trues: [ true, true, true ]
+      an_int: 42

tests/paramref_arguments_inputs.cwl

@@ -0,0 +1,72 @@
+#!/usr/bin/env cwl-runner
+cwlVersion: v1.2
+class: CommandLineTool
+
+inputs:
+  a_string:
+    type: string
+    default: z
+  a_string_array:
+    type: string[]
+    default: [a, b, c]
+  a_true:
+    type: boolean
+    default: true
+  an_array_of_trues:
+    type: boolean[]
+    default: [true, true, true]
+  an_array_of_falses:
+    type: boolean[]
+    default: [false, false, false]
+  an_array_of_mixed_booleans:
+    type: boolean[]
+    default: [false, true, false]
+  an_int:
+    type: int
+    default: 42
+  an_array_of_ints:
+    type: int[]
+    default: [42, 23]
+  a_long:
+    type: long
+    default: 4147483647
+  an_array_of_longs:
+    type: long[]
+    default: [4147483647, -4147483647]
+  a_float:
+    type: float
+    default: 4.2
+  an_array_of_floats:
+    type: float[]
+    default: [2.3, 4.2]
+  a_double:
+    type: double
+    default: 1000000000000000000000000000000000000000000
+  an_array_of_doubles:
+    type: double[]
+    default:
+      - 1000000000000000000000000000000000000000000
+      - -1000000000000000000000000000000000000000000
+arguments:
+ - '{"result":$(inputs)}'
+outputs:
+  result:
+    type:
+      type: record
+      fields:
+        a_string: string
+        a_string_array: string[]
+        a_true: boolean
+        an_array_of_trues: boolean[]
+        an_array_of_falses: boolean[]
+        an_array_of_mixed_booleans: boolean[]
+        an_int: int
+        an_array_of_ints: int[]
+        a_long: long
+        an_array_of_longs: long[]
+        a_float: float
+        an_array_of_floats: float[]
+        a_double: double
+        an_array_of_doubles: double[]
+baseCommand: echo
+stdout: cwl.output.json

tests/paramref_arguments_roundtrip.cwl

@@ -0,0 +1,24 @@
+#!/usr/bin/env cwl-runner
+cwlVersion: v1.2
+class: CommandLineTool
+
+baseCommand: echo
+
+inputs: []
+
+arguments:
+ - '{"runtime":$(runtime)}'
+
+stdout: cwl.output.json
+
+outputs:
+  runtime:
+    type:
+      type: record
+      fields:
+        cores: long
+        outdir: string
+        outdirSize: long
+        ram: long
+        tmpdir: string
+        tmpdirSize: long      

tests/paramref_arguments_runtime.cwl

@@ -0,0 +1,16 @@
+#!/usr/bin/env cwl-runner
+cwlVersion: v1.2
+
+class: CommandLineTool
+
+baseCommand: echo
+
+inputs: []
+
+arguments:
+ - '{"self":$(self)}'
+
+stdout: cwl.output.json
+
+outputs:
+  self: Any?